Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,226,924 – 10,227,020 |
Length | 96 |
Max. P | 0.960688 |
Location | 10,226,924 – 10,227,020 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.87 |
Mean single sequence MFE | -21.91 |
Consensus MFE | -18.50 |
Energy contribution | -19.10 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.84 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960688 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10226924 96 - 27905053 CUACCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUAUCUACUGACUCCAUAAUUGCAAACACGAGUGGAAAAACAAC ((((((((......))))(((((((((..(....)..))).((((((((........)))))..)))..))))))........))))......... ( -19.10) >DroSec_CAF1 84886 95 - 1 CAGCCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUCCAUAAUUGCAAACACGAGUGGAAAAACAA- ..((((((......))))))..(((((..(....)..)))))....(((((((((((....)))...))))))))........((......))..- ( -21.80) >DroSim_CAF1 84702 95 - 1 CUGCCAACGUAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUCCAUAAUUGCAAGCACGAGUGGAAAAACAA- .(((((((......))))))).(((((..(....)..)))))....(((((((((((....)))...))))))))........((......))..- ( -22.40) >DroEre_CAF1 86324 91 - 1 CUGCCAACGCAG-AGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACU---UGCAAAAUUGCAAACACGAGUGGAAAAACAG- .(((((((....-.))))))).(((((..(....)..))))).............((((((---((..............)))))))).......- ( -21.34) >DroYak_CAF1 90680 95 - 1 CUGCCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUGCAUAAUUGCAAAGACGAGUGGGAAAACAG- .(((((((......))))))).((((((........((((((..(((((........))))).))))))..))))))......((......))..- ( -24.90) >consensus CUGCCAACGCAAAAGUUGGCAAUUGCGGGAUAAUUAAUGCAGGAUAGUAAUUAUGUCUACUGACUCCAUAAUUGCAAACACGAGUGGAAAAACAA_ ..((((((......))))))..(((((..(....)..)))))....(((((((((...........)))))))))........((......))... (-18.50 = -19.10 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:31 2006