Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,222,082 – 10,222,190 |
Length | 108 |
Max. P | 0.926322 |
Location | 10,222,082 – 10,222,190 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 93.21 |
Mean single sequence MFE | -31.67 |
Consensus MFE | -27.23 |
Energy contribution | -27.72 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.14 |
Mean z-score | -2.18 |
Structure conservation index | 0.86 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10222082 108 - 27905053 GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGCUGCUUUAUUCAUAUCCAUGAGACGCGUCGCGACAUGUGUAAACGUCUGGGUAUA (((((((((...(((((......))))).)))))))))((((..((((.....))))..)))).(((((((...((((..((((.....))).)..))))))))))). ( -33.50) >DroSec_CAF1 80158 108 - 1 GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGUUGCUUUAUUCGUAUCCAUGUGACGCGUCGCGACAUAUGUAAACGUCUGGGUAUA (((((((((...(((((......))))).)))))))))((((..((((.....))))..)))).(((((((.((((....))))(((..........)))))))))). ( -30.40) >DroSim_CAF1 79959 108 - 1 GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGCUGCUUUAUUCGUAUCCAUGUGACGCGUCGCGACAUAUGUAAACGUCUGGGUAUA (((((((((...(((((......))))).)))))))))((((..((((.....))))..)))).(((((((.((((....))))(((..........)))))))))). ( -33.70) >DroYak_CAF1 85849 105 - 1 GCAGAUGCAAAUGUAUCUGUAUCUU--UCAGUAU-UGCAAUGUUGCAGUAUCUUUGCUUUAUUCGUAUCCGUGUGACGCGUCGCGACAUGUGUAAACGUCUGGGUAUA ((((((((....))))))))....(--((((..(-(((((((((((((((....)))).....((..((.....))..))..))))))).)))))....))))).... ( -29.10) >consensus GCAGAUGCAAAUGUAUAUGUAUCUGUAUCUGUAUCUGCAGUAUUGCAGUAUCGCUGCUUUAUUCGUAUCCAUGUGACGCGUCGCGACAUAUGUAAACGUCUGGGUAUA (((((((((.(((((........))))).)))))))))((((..((((.....))))..)))).(((((((.((((....))))(((..........)))))))))). (-27.23 = -27.72 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:30 2006