Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,206,638 – 10,206,750 |
Length | 112 |
Max. P | 0.855791 |
Location | 10,206,638 – 10,206,750 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -18.82 |
Consensus MFE | -11.35 |
Energy contribution | -12.36 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.60 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10206638 112 - 27905053 GAUCGAGCAAGCUCAUUGGGAUCCCAUACUACACAUACAUGUACACGUCCAUA--UAU-CCAACCAGCCGAUAUGCAUCCCAU-----UAGUUAUCUUUCCUCUAAAAACUUGCUCAAAA ....(((((((.....((((((.......((((......))))........((--(((-(.........)))))).))))))(-----(((...........))))...))))))).... ( -21.00) >DroSec_CAF1 64801 112 - 1 GAUCGAGCAAGCUCAUUGGGAUCCCAUCCUACACAUACAUGUAAACGUCCAUA--UUU-CCAACCACCCGAUAUGCAUCCAAU-----UAGUUAUCUUUCCUCUAAAAACUUGCUCAAAA ....((((((((..((((((.........((((......))))...((.....--...-...))..))))))..))......(-----(((...........))))....)))))).... ( -17.60) >DroSim_CAF1 64535 112 - 1 GAUCGAGCAAGCUCAUUGGGAUCCCAUCCUACACAUACAUGUAAACGUCCAUA--UCU-CCAACCACCCGAUAUGCAUCCAAC-----UAGUUAUCUUUCCUCCAAAAACUUGCUCAAAA ....(((((((....(((((.........((((......))))......((((--((.-..........))))))........-----.............)))))...))))))).... ( -19.40) >DroYak_CAF1 69709 114 - 1 GAUCGAGCCAGCUCGUUGGGAUCCCAUCUUACACG---AUGUACACUUACAUAUGUCUGCCAA-CACUUGAUAUGCAUCCUUACACCACCAUUAUCUUUCCUCCCAGACCACU-UCCAC- ...((((....))))((((((...((((......)---)))..........((((((......-.....))))))..........................))))))......-.....- ( -17.30) >consensus GAUCGAGCAAGCUCAUUGGGAUCCCAUCCUACACAUACAUGUAAACGUCCAUA__UCU_CCAACCACCCGAUAUGCAUCCAAU_____UAGUUAUCUUUCCUCCAAAAACUUGCUCAAAA ....(((((((......((((........((((......))))..........................((((...................))))..)))).......))))))).... (-11.35 = -12.36 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:26 2006