Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,205,834 – 10,205,965 |
Length | 131 |
Max. P | 0.857654 |
Location | 10,205,834 – 10,205,930 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.64 |
Mean single sequence MFE | -20.88 |
Consensus MFE | -15.66 |
Energy contribution | -15.82 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.45 |
Structure conservation index | 0.75 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857654 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10205834 96 + 27905053 AGC----------------C-----GCCUG-CCGCCCACAAUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUU (((----------------.-----.....-..(((.((((......((((....)))).....)))))))......(((((.......)))))..............)))....... ( -19.00) >DroVir_CAF1 64880 102 + 1 AUC---------CUAUGG-U-----G-GUGCAAGCCCACAAUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGAUACACUUU ...---------....((-(-----(-.(((((..((((((......((((....)))).....))))))......)))))..((((...(((((.....)))))...)))))))).. ( -23.70) >DroGri_CAF1 68408 102 + 1 AUA---------CUUUGC-U-----G-CCACACGCCCUCAAUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU (((---------..(((.-.-----(-(.....))...)))..))).((((....))))......((((((..(((.(((((...((....))...))))).)))...)))))).... ( -19.40) >DroYak_CAF1 68902 111 + 1 AGCACAACCCCCCCUCCACC-----GCC--GCCACCCACAAUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUU ((((................-----...--.....((((((......((((....)))).....)))))).......(((((.......))))).............))))....... ( -20.10) >DroMoj_CAF1 71425 102 + 1 AUC---------UCUCGA-U-----G-GCACACGCCCACAGUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU ...---------......-.-----(-((....)))...........((((....))))......((((((..(((.(((((...((....))...))))).)))...)))))).... ( -22.20) >DroAna_CAF1 57344 109 + 1 CCC--------CACCCUACGGCCUGGCCC-GCCGCCCACAAUUUAUAAGCCCUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUU ...--------.......((((.......-)))).((((((......((((....)))).....)))))).......(((((.......)))))....(((......)))........ ( -20.90) >consensus AUC_________CCUCGA_U_____G_CC_CACGCCCACAAUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU ...............................................((((....))))......((((((..(((.(((((..............))))).)))...)))))).... (-15.66 = -15.82 + 0.17)
Location | 10,205,834 – 10,205,930 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.64 |
Mean single sequence MFE | -21.96 |
Consensus MFE | -13.58 |
Energy contribution | -13.97 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.06 |
Mean z-score | -2.35 |
Structure conservation index | 0.62 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10205834 96 - 27905053 AAAGUGUAGCAAAUAAAUACAAAAUGCAAAAGAUAAUUGCAAUCAAAGCCACAAAAUGUAGCCAAAAGGCUUAUAAAUUGUGGGCGG-CAGGC-----G----------------GCU ....(((.((..............(((((.......))))).......((((((..(((((((....))).))))..)))))))).)-))...-----.----------------... ( -21.90) >DroVir_CAF1 64880 102 - 1 AAAGUGUAUCAAAUAAAUACAAAAUUCAAAAGAUAAUUGCAAUCAAAGCCACAAAAUGUAGCCAAAAGGCUUAUAAAUUGUGGGCUUGCAC-C-----A-CCAUAG---------GAU ....(((((.......)))))................((((.....((((((((..(((((((....))).))))..)))).))))))))(-(-----.-.....)---------).. ( -19.40) >DroGri_CAF1 68408 102 - 1 AAAGUGUAGCAAAUAAAUACAAAAUUCAAAAGAUAAUUGCAAUCAAAGCCACAAAAUGUAGCCAAAAGGCUUAUAAAUUGAGGGCGUGUGG-C-----A-GCAAAG---------UAU ....((((.........))))...............((((..(((..(((.(((..(((((((....))).))))..)))..)))...)))-.-----.-))))..---------... ( -19.20) >DroYak_CAF1 68902 111 - 1 AAAGUGUAGCAAAUAAAUACAAAAUGCAAAAGAUAAUUGCAAUCAAAGCCACAAAAUGUAGCCAAAAGGCUUAUAAAUUGUGGGUGGC--GGC-----GGUGGAGGGGGGGUUGUGCU ..((..((((.......(((....(((((.......)))))......(((((..(((..((((....)))).....)))....)))))--...-----.)))........))))..)) ( -26.16) >DroMoj_CAF1 71425 102 - 1 AAAGUGUAGCAAAUAAAUACAAAAUUCAAAAGAUAAUUGCAAUCAAAGCCACAAAAUGUAGCCAAAAGGCUUAUAAACUGUGGGCGUGUGC-C-----A-UCGAGA---------GAU ...(..((((.....................(((.......)))....(((((...(((((((....))).))))...))))))).))..)-.-----(-((....---------))) ( -18.60) >DroAna_CAF1 57344 109 - 1 AAAGUGUAGCAAAUAAAUACAAAAUGCAAAAGAUAAUUGCAAUCAAAGCCACAAAAUGUAGCCAAAGGGCUUAUAAAUUGUGGGCGGC-GGGCCAGGCCGUAGGGUG--------GGG ....((((.........))))...(((((.......)))))(((....((((((..(((((((....))).))))..))))))(((((-.......)))))..))).--------... ( -26.50) >consensus AAAGUGUAGCAAAUAAAUACAAAAUGCAAAAGAUAAUUGCAAUCAAAGCCACAAAAUGUAGCCAAAAGGCUUAUAAAUUGUGGGCGGG_GG_C_____A_UCGAGG_________GAU ........((.....................(((.......)))....((((((..(((((((....))).))))..))))))))................................. (-13.58 = -13.97 + 0.39)
Location | 10,205,852 – 10,205,965 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 85.38 |
Mean single sequence MFE | -23.45 |
Consensus MFE | -15.66 |
Energy contribution | -15.82 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.89 |
Structure conservation index | 0.67 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10205852 113 + 27905053 A-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUU-GGGCAAUUGUCCGCA-UUCGGCCUUUGUCUCUGGUU .-......((((....)))).......(((((..(((.(((((..............))))).)))...)))))(((..-((((((..(.(((..-..))))..))))))..))). ( -27.24) >DroVir_CAF1 64904 109 + 1 A-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGAUACACUUU-GCCCAAUUGUACGUUCAUCGGCUUUUGUAUU----- .-.....(((((....((((((.....)))))).(((.(((((((.((....))....((((((.....))))))....-....)))))))...)))..))))).......----- ( -21.80) >DroGri_CAF1 68432 109 + 1 A-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU-GCCCAGUUGUUCGUUCAACGGCUUUUGUAUU----- .-.....(((((....(((.......((((((..(((.(((((...((....))...))))).)))...))))))....-)))..((((......))))))))).......----- ( -25.90) >DroWil_CAF1 73665 96 + 1 AGUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUUGCCCAAUUGUUCUCG-U------------------- ........((((....))))(((..(((.(((......(((((.......)))))....(((......))).........)))))).))).....-.------------------- ( -17.30) >DroMoj_CAF1 71449 109 + 1 G-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU-GUCCAAUUGUUCGCUCAUCGGCUUUUGUAUU----- .-.....(((((..((((..(((...((((((..(((.(((((...((....))...))))).)))...))))))...)-)))))).((......))..))))).......----- ( -22.70) >DroAna_CAF1 57375 114 + 1 A-UUUAUAAGCCCUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUU-GGGCAAUUGUCCGUUUUUCGGCCUUUGUCUCUGCCA .-.............((((..((...((((((..(((.(((((..............))))).)))...))))))...)-)(((((..(.(((.....))))..)))))...)))) ( -25.74) >consensus A_UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU_GCCCAAUUGUUCGCUCAUCGGCUUUUGUAUU_____ ........((((....))))......((((((..(((.(((((..............))))).)))...))))))......................................... (-15.66 = -15.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:25 2006