| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,204,997 – 10,205,097 |
| Length | 100 |
| Max. P | 0.629488 |
| Location | 10,204,997 – 10,205,097 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.91 |
| Mean single sequence MFE | -25.15 |
| Consensus MFE | -9.80 |
| Energy contribution | -10.80 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10204997 100 - 27905053 AAUUAAAU-------AAUCUCCAAUGAUAACCGCAUAAUUUAAUUGUCCCAGUGCAAGGACUCCAUUGCACCAUUGCACCCCUCCCUCGCUG--GAUGAGGGGGGGGGG ........-------......(((((......(((.........)))....((((((((...)).)))))))))))..(((((((((((...--..))))))))))).. ( -32.80) >DroSec_CAF1 63194 100 - 1 AAUUAAAUUAAAAUAAAUCUCCAAUAAUAACCGCAUAAUUUAAUUGUCCCAGUGCAAGGACUCUAUUGCACC------CCCUUCCCGUACAG---AAGGGAAGGGGGUG ((((((((((.........................))))))))))((((........)))).......((((------((((((((......---..)))))))))))) ( -33.11) >DroEre_CAF1 63690 100 - 1 AAUUGAAU-------AAUAUGCAACAAAAGCCGCAUAAUUUAAUUGUCCCAGUGCAAGGACUCCAC--CCCCUUUGCACCCCCUUUGUGACGCCCAUGACAGGAAGGAG ((((((((-------..(((((..........))))))))))))).(((..((((((((.......--...))))))))..((((..((.....))..).)))..))). ( -22.90) >DroYak_CAF1 68109 96 - 1 AACUAAAU-------AAUCUCCAACAAUAACCGCAUAAUUAAAUUGUCCCAGUGCAAGGACACCAC--CCCUUUUGCACCCCUUUUGCGACGCCCAUGACAGGAA---- ........-------...............((.(((........(((((........)))))....--.....(((((.......))))).....)))...))..---- ( -11.80) >consensus AAUUAAAU_______AAUCUCCAACAAUAACCGCAUAAUUUAAUUGUCCCAGUGCAAGGACUCCAC__CACCUUUGCACCCCUCCCGCGACG__CAUGACAGGAAGG_G .............................................((((........)))).................((((((((...........)))))))).... ( -9.80 = -10.80 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:22 2006