Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,204,863 – 10,204,954 |
Length | 91 |
Max. P | 0.536998 |
Location | 10,204,863 – 10,204,954 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -23.09 |
Consensus MFE | -13.98 |
Energy contribution | -14.40 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.15 |
Mean z-score | -2.15 |
Structure conservation index | 0.61 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10204863 91 + 27905053 ACAGCAGAAACAUUGUUGCAUGUGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC .((((((.....))))))...(((((------(((((((..(---------((.........)))........))))))).....(((.....-....))).))))) ( -17.80) >DroSec_CAF1 63060 91 + 1 GCAAGAGCAACAUUGUUGCAUGUGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC ((..((((......(((((.(((((.------...((((...---------)))))))))..)))))......((....))....)))).((.-.....)).))... ( -22.30) >DroEre_CAF1 63561 91 + 1 ACAGCAGCAACAUUGUUGCAUGCGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC ...((((((....))))))..(((((------(((((((..(---------((.........)))........))))))).....(((.....-....))).))))) ( -24.00) >DroYak_CAF1 67993 91 + 1 ACAGCAGCAACAUUGUUGCAUGUGGC------CAUUUGCAAC---------GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC-UAAAAGCAGCCGC ...((((((....))))))..(((((------(((((((..(---------((.........)))........))))))).....(((.....-....))).))))) ( -22.10) >DroAna_CAF1 56692 95 + 1 ---GCAGCAGCAUUGUUGCAUGUGGCCACUGCCAUUUGCAACU--------GCAAUCACAGAGUGACCAGAAAGCAAAUGCGAGAGCUCAGCC-UAAAAGCAGCCGC ---...((.((...((((((.(((((....))))).))))))(--------((..((((...)))).......((....((....))...)).-.....))))).)) ( -28.40) >DroPer_CAF1 71623 97 + 1 -------ACACAUUGUUGCAUGUGGCAAAUGCCAUUUGCAACAGCACAGCAGCAAUCACAGUCC---AAAAAACCAAAUGCAAAAGCUUAGCCCCAAAAGCAGCCAC -------......(((((((.(((((....))))).)))))))((...(((.............---...........)))....((((........)))).))... ( -23.96) >consensus ACAGCAGCAACAUUGUUGCAUGUGGC______CAUUUGCAAC_________GCAAUCACAGAGCGACCAAAAAGCAAAUGCAAAAGCUCAGCC_UAAAAGCAGCCGC ......(((((...)))))..(((((......(((((((..................................))))))).....(((..........))).))))) (-13.98 = -14.40 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:21 2006