Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,203,541 – 10,203,633 |
Length | 92 |
Max. P | 0.662254 |
Location | 10,203,541 – 10,203,633 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -15.33 |
Energy contribution | -15.33 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.69 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10203541 92 + 27905053 UGGGCAGCAAAAGCAGACGCAGAA------------GCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC ...((((........(((((....------------))....((....))....)))(((((.(((((((((..(.....)..))))))))).))))))))).. ( -23.30) >DroSec_CAF1 61770 94 + 1 UGGGCAGCAAAAGCAGAGGCAGAAG----------AGCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC ...((.((....))....)).....----------.((((((((....)).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -22.40) >DroSim_CAF1 61821 86 + 1 UGGGCAGCAAAAGCAGAA------------------GCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC ......((....))....------------------((((((((....)).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -21.40) >DroEre_CAF1 62185 104 + 1 UGGACAGCAAAGGCAGAAGCAGAAGCAGAAGCAGAAGCUGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC ......((....((....))....))....((((((((((......)))).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -27.10) >DroYak_CAF1 66662 80 + 1 UGGACAGC------------------------AGAAUCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC ......((------------------------((((......((....)).........(((.(((((((((..(.....)..))))))))).))))))))).. ( -20.00) >DroPer_CAF1 70143 77 + 1 CGCCCAGCAGCAGC---------------------------AGCAGCAGCUAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC .........((((.---------------------------(((....)))......(((((.(((((((((..(.....)..))))))))).))))))))).. ( -18.40) >consensus UGGGCAGCAAAAGCAGA___________________GCAGAAGCGGCAGCAAAAGUCAAGGUAUUUUACUUGUGAAUUGUUUGUAAGUGGAAAACUUUCUGCAC .............................................((((........(((((.(((((((((..(.....)..))))))))).))))))))).. (-15.33 = -15.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:20 2006