Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,190,203 – 10,190,331 |
Length | 128 |
Max. P | 0.970165 |
Location | 10,190,203 – 10,190,297 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -22.25 |
Consensus MFE | -15.59 |
Energy contribution | -16.77 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.19 |
Mean z-score | -1.57 |
Structure conservation index | 0.70 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10190203 94 - 27905053 GCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAAUAACCCAAUCCACAAUCCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA----ACA (((((..(.....)..)))))..((((......))))..........(((((....((((....)))).......)))))...........----... ( -23.90) >DroSec_CAF1 48540 93 - 1 GCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCAAUUCCCAAACCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA----ACA (((((..(.....)..)))))..((((......))))..-.........................((((((......))))))........----... ( -22.90) >DroSim_CAF1 48562 93 - 1 UCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCCAUUCCCAAACCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA----ACA ...(((((((...))))...)))((((......))))..-....((((..(.....((((....))))....)..))))............----... ( -21.80) >DroEre_CAF1 48953 78 - 1 GCUGGAGCUCAAAGAGCCGGUCC----CCCAUACCCC----------------AUCCCAUGCCCCUGCUCCCGAGUUGGACUUACAACUAAGCAGACA (((((.((((...)))).((...----.)).......----------------...))).))..(((((....(((((......))))).)))))... ( -20.40) >consensus GCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA_ACCCCAAUUCCCAAACCCAUCCCCAUGGUCUCGAGGUGGACCAACAAGUAA____ACA (((((..(.....)..)))))..((((......))))............................((((((......))))))............... (-15.59 = -16.77 + 1.19)
Location | 10,190,239 – 10,190,331 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 70.41 |
Mean single sequence MFE | -24.16 |
Consensus MFE | -15.59 |
Energy contribution | -15.90 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.08 |
Mean z-score | -1.78 |
Structure conservation index | 0.65 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.970165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10190239 92 - 27905053 UUCUUCUGCGCCAAUCGAAAGAGCUGGCCAGGCGGCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAAUAACCCAAUCCACAAUCCC ....((((.((((.((....))..)))))))).((((((..(.....)..)))))).((((......))))..................... ( -32.70) >DroSec_CAF1 48576 76 - 1 UUCUUCUG---------------CUGGCAAAGCGGCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCAAUUCCCAAACCC .......(---------------((.....)))((((((..(.....)..)))))).((((......))))..-.................. ( -21.60) >DroSim_CAF1 48598 76 - 1 UUCUUCUG---------------CUGGCAAAGCGUCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA-ACCCCCAUUCCCAAACCC .......(---------------(((((..(((.......)))......))))))..((((......))))..-.................. ( -18.60) >DroYak_CAF1 48835 76 - 1 UUCUUCGCCGCCAGAUGAAAGAGCCGGCG-AGCGGCUGGAGCUCAAAGAGCCAGUUUGGGAUCCAUUCCCCA---------------AUCCC .....(((((((.............))))-.)))(((((..(.....)..)))))(((((........))))---------------).... ( -23.72) >consensus UUCUUCUG_______________CUGGCAAAGCGGCUGGAGCUCAAAGAGCCAGUCCGGGCUCCAAUGCCCAA_ACCCCAAUUCCCAAACCC .........................((......((((((..(.....)..)))))).((((......))))..................)). (-15.59 = -15.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:19 2006