| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,187,018 – 10,187,136 |
| Length | 118 |
| Max. P | 0.841101 |
| Location | 10,187,018 – 10,187,136 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.21 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -4.14 |
| Energy contribution | -3.86 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.19 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10187018 118 + 27905053 UUUCUUGCUUUGAGCUGCUGUAUAUGUAUUUAAUAUCUUCUUAAUUUUAAAACUGUAUCUUACUUGCGAAG-GAUUUCUGAUUCUUUUAUGAAAUCUUU-UUUUUCCUUAGUUCUUAGCU ......(((..(((((((.(((...((((.........................))))..)))..))((((-(((((((((.....))).)))))))))-)........)))))..))). ( -20.21) >DroSec_CAF1 45356 116 + 1 UUUCUUGCUUUGAGCUGCUGUAAGUGUUUUUAAUAUUUUCCUUAUUUGAAAAAUGUAUCUUACUUGCGCAG-GGAUUUCGAUUCUCUUAUGAAAUCUUU---UUUCCUUAGUUUUUAGCU ......(((..(((((((.(((((((......(((((((.(......).)))))))....)))))))))((-(((....((((.((....))))))...---..))))))))))..))). ( -25.10) >DroSim_CAF1 45454 117 + 1 UUUCUUGCUUUGAGCUGCUGUAAGUGUUUUUAAUAUUUUC-UUAAUUGAAAAAUGUAUCUUACUUGCGCAGAGGCUUUCAAUUCUCUUAUGAAAUCUUU-U-UUUCCUUAGUUCUUAGCU ......(((..(((((((.(((((((....((...(((((-......)))))...))...)))))))))(((((.(((((.........))))).))))-)-.......)))))..))). ( -24.80) >DroEre_CAF1 45893 98 + 1 -----------GAGCUGCUUU---------UUGAAUCUUCCUAAU-UCAAAAACGUAUCUUACUUGCUGCG-GGCUCCUGAUUUUCUAGAGUACAGCCAUUUUCUUAUUUGAUCUCAGCU -----------.(((((.(((---------((((((.......))-)))))))............((((..-.((((..(.....)..)))).))))..................))))) ( -19.30) >DroYak_CAF1 45665 105 + 1 ---AUUAAUUUGAGCUGCUAU--------CGUAUAUCUUCUUAAU-UUGAAAAUGUAUCUUGCUUGCUCCG-UGUUCCU--UUUUCUAUAGAAAACCCCUUUUCUUAGUUGCACUCAGCU ---........((((.((...--------.((((((.(((.....-..))).))))))...))..)))).(-(((..((--........((((((....)))))).))..))))...... ( -18.90) >consensus UUUCUUGCUUUGAGCUGCUGUA__UGU_UUUAAUAUCUUCCUAAUUUGAAAAAUGUAUCUUACUUGCGCAG_GGCUUCUGAUUCUCUUAUGAAAUCUUU_UUUUUCCUUAGUUCUUAGCU ............(((((.....................................(((.......)))..............(((......)))......................))))) ( -4.14 = -3.86 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:18 2006