Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,179,989 – 10,180,079 |
Length | 90 |
Max. P | 0.742851 |
Location | 10,179,989 – 10,180,079 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -16.63 |
Energy contribution | -16.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.68 |
Structure conservation index | 0.82 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10179989 90 + 27905053 GCCA---CUUGGUACUCUGCACCCAGAACCGAGAUCGCCCGGCUCCCAAAAAUAAACACUCGCCCGGCAUCAUCAUCAUAAUAAUAAUGAUAC ....---((((((..((((....))))))))))...(((.(((..................))).)))......(((((.......))))).. ( -20.87) >DroSec_CAF1 38348 92 + 1 GCCACUACUUGGUACUCUGCGCCCAGAACCGAGAUCGCCUGGCUCCCAAAAAUAAACACUCGC-CGGCAUCAUCAUCAUAAUAAUAAUGAUAC (((....((((((..((((....)))))))))).......(((..................))-))))......(((((.......))))).. ( -20.07) >DroSim_CAF1 38023 92 + 1 GCCACUACUUGGUACUCUGCGCCCAGAACCGAGAUCGCCUGGCUCCCAAAAAUAAACACUCGC-CGGCAUCAUCAUCAUAAUAAUAAUGAUAC (((....((((((..((((....)))))))))).......(((..................))-))))......(((((.......))))).. ( -20.07) >consensus GCCACUACUUGGUACUCUGCGCCCAGAACCGAGAUCGCCUGGCUCCCAAAAAUAAACACUCGC_CGGCAUCAUCAUCAUAAUAAUAAUGAUAC (((....((((((..((((....)))))))))).......((...))..................)))......(((((.......))))).. (-16.63 = -16.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:15 2006