Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,179,288 – 10,179,398 |
Length | 110 |
Max. P | 0.532568 |
Location | 10,179,288 – 10,179,398 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -22.38 |
Consensus MFE | -13.92 |
Energy contribution | -14.37 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.28 |
Structure conservation index | 0.62 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10179288 110 - 27905053 GCCC--------CCCUUUCACUAUCGGCUUUCUCCAGCGUCGCUUGCGCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUUCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA ....--------..............((((((...(((((.....)))))(((((..((((((((....))).)))))......(((((.....)))))..)))))..)))))).... ( -21.40) >DroPse_CAF1 40328 95 - 1 UCCU---------CUGGCCGCUAUCGG--------------ACACGCGCAACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGCACGGAAGUAUAA ...(---------(((.(((....)))--------------....(((((..((((.((((((((....))).)))))..))))(((((.....)))))..))))).))))....... ( -23.90) >DroEre_CAF1 38242 114 - 1 CAGCC----CGCCCCUUUCACUAUCGGCUUUCUCCAGUGUCGCUUGCGCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA ..((.----(((......((((...((......))))))......)))....((((.((((((((....))).)))))..))))..................))((((....)))).. ( -22.50) >DroWil_CAF1 44119 109 - 1 AUU-GCUGCCGCCCCCUUCACAG--------CGCCAGCAUUCCGCGCUCCACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA ..(-((((.(((..........)--------)).)))))((((((((.....((((.((((((((....))).)))))..))))(((((.....)))))...)))..)))))...... ( -28.30) >DroAna_CAF1 33469 104 - 1 -------------CACCUCACUAUCAGCUUUCUCCAGUGUCACUCG-GCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA -------------.............((........(((((....)-)).))((((.((((((((....))).)))))..))))..................))((((....)))).. ( -19.60) >DroPer_CAF1 40744 95 - 1 UCCU---------CUGGCCGCUAUCGG--------------ACACGCUCAACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGCACGGAAGUAUAA ...(---------(((..(((...((.--------------...))......((((.((((((((....))).)))))..))))..................)))..))))....... ( -18.60) >consensus UCC__________CCCUUCACUAUCGG____CUCCAG_GUCACUCGCGCUACGUAAUUAAGUGACGCAAGUCAAUUUAUUUUGCAAUUAAUCAUUAAUUUAUGCGUACGGAAGUAUAA .............................................((((...((((.((((((((....))).)))))..))))(((((.....)))))...))))((....)).... (-13.92 = -14.37 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:14 2006