Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,178,724 – 10,178,821 |
Length | 97 |
Max. P | 0.579638 |
Location | 10,178,724 – 10,178,821 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.88 |
Mean single sequence MFE | -16.92 |
Consensus MFE | -13.44 |
Energy contribution | -13.38 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.20 |
Mean z-score | -1.49 |
Structure conservation index | 0.79 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10178724 97 + 27905053 AAAUAUUCUAUACACAUUUUUGUCAUAUUUUCUAAUUGAAAUUGACGUGGAAAUCGAGUGGAAAAUAAAAACCUACCAAGAGUAUGUAAAGUAUAUC ..((((.((.((((.((((((((((...((((.....)))).)))).........(.((((...........))))))))))).)))).)).)))). ( -15.30) >DroSec_CAF1 37048 97 + 1 AAAUAUUCUAUACACAUUUAUGUCACAUUUCCUAAUUGGAAUUGACGUGGAAAUCGAGUGGAAAAUCAAAACCUACCAAGAGUAUAUCAAGUGUAUC .........((((((.(((((((((...((((.....)))).)))))))))..((..((((...........))))...)).........)))))). ( -20.50) >DroSim_CAF1 36272 97 + 1 AAAUAUUCUAUACACAUUUUUGUCACAUUUCCUAAUUGGAAUUGACGUGGAAAUCGAGUGGAAAAUCAAAACCUACCAAGAGUAUAUCAAGUGUAUC .........((((((.((..(((((...((((.....)))).)))))..))..((..((((...........))))...)).........)))))). ( -16.90) >DroYak_CAF1 37243 81 + 1 AAAUAUUCUACACACAUUUGUGUCACAUCUCCUAAUUGGAAUUGACGUGAAAAUCGAGUGGAAAAUGAAAACUUACCAAUA---------------- .....((((((.(((....)))((((.(((((.....)))...)).)))).......))))))..................---------------- ( -15.00) >consensus AAAUAUUCUAUACACAUUUUUGUCACAUUUCCUAAUUGGAAUUGACGUGGAAAUCGAGUGGAAAAUCAAAACCUACCAAGAGUAUAUCAAGUGUAUC .....((((((.(...(((((((((...((((.....)))).)))))))))....).)))))).................................. (-13.44 = -13.38 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:13 2006