Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,176,801 – 10,176,891 |
Length | 90 |
Max. P | 0.976868 |
Location | 10,176,801 – 10,176,891 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 95.40 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -19.25 |
Energy contribution | -20.12 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.05 |
Mean z-score | -1.76 |
Structure conservation index | 0.91 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10176801 90 + 27905053 AAAUGGCAGCCAUUCGGCAGCCAAAUCUGCAGAGCACACAAACAUUACGUGGCUAUUUCGAGCGCAGCAUUUAAGCUCUUCAAUCUACAA ...((((.(((....))).))))....((.(((((.(((.........)))(((......)))...........))))).))........ ( -23.20) >DroSec_CAF1 35118 90 + 1 AAAUGGCAGCCAUUCGGCAGCCAAAUCUGCAGAGCACACAAACAUUACGUGGCUAUUUCGAGCGCAGCAUUUAAGCUCUUCAAUCUACAA ...((((.(((....))).))))....((.(((((.(((.........)))(((......)))...........))))).))........ ( -23.20) >DroSim_CAF1 34312 90 + 1 AAAUGGCAGCCAUUCGGCAGCCAAAUCUGCAGAGCACACAAACAUUACGUGGCUAUUUCGAGCGCAGCAUUUAAGCUCUUCAAUCUACAA ...((((.(((....))).))))....((.(((((.(((.........)))(((......)))...........))))).))........ ( -23.20) >DroEre_CAF1 35733 89 + 1 AAAUGGCAGCCAUUCGGC-GCCAAAUCUGCAGAGCACACAAACAUUACGUGGCUAUUUCGAGCGCAGCAUUUAAGCUCUUCAAUCUACAA ...((((.(((....)))-))))....((.(((((.(((.........)))(((......)))...........))))).))........ ( -22.90) >DroYak_CAF1 35285 89 + 1 AAAUGGCAGCCAUUCGGA-GCCAAAUCUGCAGAGCACACAAACAUUACGUGGCUAUUUCGAGCGCAGCAUUUAAGCUCUUCAAUCUACAA ...((((..((....)).-))))....((.(((((.(((.........)))(((......)))...........))))).))........ ( -18.80) >DroAna_CAF1 31399 89 + 1 AAAUGGCAGCCAUUCAA-AGCCAAAUCUUGGGAGCACACAAACAUUACGUAGCUAUUUUGAGCGGAGCAGUUAAGCUCUUCAAUCUACAA ...((((..........-.))))....(((........))).......((((.....((((..(((((......))))))))).)))).. ( -15.80) >consensus AAAUGGCAGCCAUUCGGCAGCCAAAUCUGCAGAGCACACAAACAUUACGUGGCUAUUUCGAGCGCAGCAUUUAAGCUCUUCAAUCUACAA ...((((.(((....))).))))....((.(((((.(((.........)))(((......)))...........))))).))........ (-19.25 = -20.12 + 0.86)
Location | 10,176,801 – 10,176,891 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 95.40 |
Mean single sequence MFE | -24.87 |
Consensus MFE | -23.79 |
Energy contribution | -24.07 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.11 |
Structure conservation index | 0.96 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10176801 90 - 27905053 UUGUAGAUUGAAGAGCUUAAAUGCUGCGCUCGAAAUAGCCACGUAAUGUUUGUGUGCUCUGCAGAUUUGGCUGCCGAAUGGCUGCCAUUU (((((((((((.((((......))).)..))))....((((((.......)))).)))))))))...((((.(((....))).))))... ( -27.70) >DroSec_CAF1 35118 90 - 1 UUGUAGAUUGAAGAGCUUAAAUGCUGCGCUCGAAAUAGCCACGUAAUGUUUGUGUGCUCUGCAGAUUUGGCUGCCGAAUGGCUGCCAUUU (((((((((((.((((......))).)..))))....((((((.......)))).)))))))))...((((.(((....))).))))... ( -27.70) >DroSim_CAF1 34312 90 - 1 UUGUAGAUUGAAGAGCUUAAAUGCUGCGCUCGAAAUAGCCACGUAAUGUUUGUGUGCUCUGCAGAUUUGGCUGCCGAAUGGCUGCCAUUU (((((((((((.((((......))).)..))))....((((((.......)))).)))))))))...((((.(((....))).))))... ( -27.70) >DroEre_CAF1 35733 89 - 1 UUGUAGAUUGAAGAGCUUAAAUGCUGCGCUCGAAAUAGCCACGUAAUGUUUGUGUGCUCUGCAGAUUUGGC-GCCGAAUGGCUGCCAUUU (((((((((((.((((......))).)..))))....((((((.......)))).)))))))))...((((-(((....))).))))... ( -26.70) >DroYak_CAF1 35285 89 - 1 UUGUAGAUUGAAGAGCUUAAAUGCUGCGCUCGAAAUAGCCACGUAAUGUUUGUGUGCUCUGCAGAUUUGGC-UCCGAAUGGCUGCCAUUU (((((((((((.((((......))).)..))))....((((((.......)))).)))))))))...((((-.((....))..))))... ( -23.20) >DroAna_CAF1 31399 89 - 1 UUGUAGAUUGAAGAGCUUAACUGCUCCGCUCAAAAUAGCUACGUAAUGUUUGUGUGCUCCCAAGAUUUGGCU-UUGAAUGGCUGCCAUUU ..((((......((((......))))((.(((((..(((((((.......)))).))).(((.....))).)-)))).)).))))..... ( -16.20) >consensus UUGUAGAUUGAAGAGCUUAAAUGCUGCGCUCGAAAUAGCCACGUAAUGUUUGUGUGCUCUGCAGAUUUGGCUGCCGAAUGGCUGCCAUUU (((((((((((.((((......))).)..))))....((((((.......)))).)))))))))...((((.(((....))).))))... (-23.79 = -24.07 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:13 2006