Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,173,940 – 10,174,043 |
Length | 103 |
Max. P | 0.633846 |
Location | 10,173,940 – 10,174,043 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -30.28 |
Consensus MFE | -22.14 |
Energy contribution | -21.26 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.24 |
Mean z-score | -1.79 |
Structure conservation index | 0.73 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10173940 103 + 27905053 ---UCUACGUUUUCGGUCAUUUUGGCAACUUUUUGCCAACCAUAUUUGGCCUCGAGGCUGGCGAGAUGGAUUUUUGGUACUGGCCAACCAAACUCCUGUCCUUCUC ---.........((((((...(((((((....)))))))(((....)))......)))))).((((.((((.((((((........)))))).....)))).)))) ( -28.60) >DroSec_CAF1 32307 103 + 1 ---UCUAUGUUUUCGGUCAUUUUGGUAACUUUUUGCCAACCAUAUUUGGCCUCGAGCCUGGCGAGAUGGAUUUUUGGUACUGGCCAACCAAACUUGUGUCCUUCUC ---.(((.((((..(((((..(((((((....))))))).......)))))..)))).))).((((.((((.((((((........)))))).....)))).)))) ( -26.70) >DroSim_CAF1 31464 103 + 1 ---UCUACGUUUUCGGUCAUUUUGGUAACUUUUUGCCAACCAUAUUUGGCCUCGAGCCUGGCGAGAUGGAUUUUUGGUACUGGCCAACCAAACUUCUGUCCUUCUC ---.(((.((((..(((((..(((((((....))))))).......)))))..)))).))).((((.((((.((((((........)))))).....)))).)))) ( -26.70) >DroEre_CAF1 32995 106 + 1 AGGUCUACAUUUUCGGCCAUUUCGGCAACUUUUUGCCAACCGUAUUUGGCCUCGAGGCUGUCGAGAUGGAUUUUUGGUGCUGGCCAGGCAAACUCCUGUCCUUCUC .((((..((((.....(((((((((((.((((..(((((......)))))...)))).)))))))))))......))))..)))).((((......))))...... ( -36.80) >DroYak_CAF1 32318 106 + 1 AAGUCUACAUUUUCGCCCGUUUCGGCAACUUUUUGCCAACCAUAUUUGGCCUCGAGGCUGCGGAGAUGGAUUUUUGGUGCUGGCCAAGCCGACUCCUGUCCUUCGC .((((..(((((((((..((((((((((....)))))..(((....)))....))))).)))))))))....((((((....))))))..))))............ ( -32.60) >consensus ___UCUACGUUUUCGGUCAUUUUGGCAACUUUUUGCCAACCAUAUUUGGCCUCGAGGCUGGCGAGAUGGAUUUUUGGUACUGGCCAACCAAACUCCUGUCCUUCUC ..............((((((((((.((.(((...(((((......)))))...)))..)).))))))))....(((((....)))))))................. (-22.14 = -21.26 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:11 2006