Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,172,448 – 10,172,538 |
Length | 90 |
Max. P | 0.842980 |
Location | 10,172,448 – 10,172,538 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 89.27 |
Mean single sequence MFE | -10.89 |
Consensus MFE | -10.38 |
Energy contribution | -10.25 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.95 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10172448 90 + 27905053 AAAGCAAUUUAAAUUAAUACAAAGUGCACAACUCACACCGACACUUGCACAUACAC------------AUACACUCGGAAAAACUGAGCAGACGGCCACCCA- ...((..................(((((....((.....))....)))))......------------.....(((((.....)))))......))......- ( -12.20) >DroSec_CAF1 30829 90 + 1 AAAGCAAUUUAAAUUAAUACAAAGUGCACA-CUCACCCCGACACUUGCACAUACAC------------AUACACUCGGAAAAACUGAGCAGACAGCCACCCAA ...((..................(((((..-.((.....))....)))))......------------.....(((((.....)))))......))....... ( -12.00) >DroSim_CAF1 29975 90 + 1 AAAGCAAUUUAAAUUAAUACAAAGUGCACA-CUCACCCCGACACUUGCACAUACAC------------AUACACUCGGAAAAACUGAGCAGACAGCCACCCAA ...((..................(((((..-.((.....))....)))))......------------.....(((((.....)))))......))....... ( -12.00) >DroEre_CAF1 31540 101 + 1 AAAGCAAUUUAAAUUAAUACAAAGUGCACA-CUUACCCCAACACUUCCACAUACACAUACACAUAGACAUACACUCGGAAAAACUGAGCAGACGGCCAACCA- ...((................(((((....-..........)))))...........................(((((.....)))))......))......- ( -7.34) >consensus AAAGCAAUUUAAAUUAAUACAAAGUGCACA_CUCACCCCGACACUUGCACAUACAC____________AUACACUCGGAAAAACUGAGCAGACAGCCACCCA_ ...((..................(((((....((.....))....))))).......................(((((.....)))))......))....... (-10.38 = -10.25 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:10 2006