Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,424,139 – 1,424,252 |
Length | 113 |
Max. P | 0.646172 |
Location | 1,424,139 – 1,424,252 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.87 |
Mean single sequence MFE | -17.40 |
Consensus MFE | -12.45 |
Energy contribution | -12.26 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.22 |
Mean z-score | -1.18 |
Structure conservation index | 0.72 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1424139 113 - 27905053 ACUCAAUCGGUGUCAAAA-U-AUGCAAAAUAAAAAGCCACAUUUUACUUGUCUUUAUUUUGUAAAAUUACUACCGCCAGCAAUCUAAAGAUUUCUAAUGUUGCAACAACAAAUAC-- .......(((((......-.-.(((((((((((.....(((.......))).))))))))))).......)))))...(((((....((....))...)))))............-- ( -15.36) >DroPse_CAF1 7044 111 - 1 AUGUAAUUGGUGUCAAAA-U-AUGCAACAUGAAAAGCAACAUUUUACUUGUCUUUAUUUUGUGUAGAUAAUAA-ACCAACAAUCUAAAGAUUUCUUUUGUUGCAACAAAACU-AA-- .(((..((.((((.....-.-.....)))).))..((((((........(((((((..((((...........-....))))..)))))))......)))))).))).....-..-- ( -18.00) >DroEre_CAF1 6167 112 - 1 UCUUAAUCGGUGUCAAAA-U-AUGCAAAAUUAAAAGCUACAUUUUACUUGUCUUUAUUUUGUGAAAUUGCUAU-ACCAACAAUCUAAAGAUUUCUAAUGUUGCAACAACAAUCAC-- ..(((((...(((.....-.-..)))..)))))..((.(((((......(((((((..((((...........-....))))..)))))))....))))).))............-- ( -15.26) >DroWil_CAF1 6205 111 - 1 AAAUAAUUGGUGUCGAAAUU-AUGCCAAAUGAAAAGCCACAUUUUACUUGUCUUUAUUGUGUCAAGAAAUU---UCCAGCAUUCUAAAGAUUUCUAAUGUUGCAACAUUAAAUAC-- ......(((((((.......-))))))).......((.(((((......(((((((..((((...((....---))..))))..)))))))....))))).))............-- ( -19.10) >DroMoj_CAF1 7629 109 - 1 AUAUAAUCGGUGUCAAAA-UAAUGCAAAAUUAAACGCCACAUUUUACUUGUCUUUAUUUAUUCGGA-----AA-ACUCGAUCUUUAAAGAUUUCUAAUGUUGCGACAAA-AAUAUUU ..........((((....-((((.....))))...((.(((((......(((((((.....((((.-----..-..))))....)))))))....))))).))))))..-....... ( -18.70) >DroPer_CAF1 6711 111 - 1 AUGUAAUUGGUGUCAAAA-U-AUGCAACAUGAAAAGCAACAUUUUACUUGUCUUUAUUUUGUGUAGAUAAUAA-ACCAACAAUCUAAAGAUUUCUUUUGUUGCAACAAAACU-AA-- .(((..((.((((.....-.-.....)))).))..((((((........(((((((..((((...........-....))))..)))))))......)))))).))).....-..-- ( -18.00) >consensus AUAUAAUCGGUGUCAAAA_U_AUGCAAAAUGAAAAGCCACAUUUUACUUGUCUUUAUUUUGUGAAAAUAAUAA_ACCAACAAUCUAAAGAUUUCUAAUGUUGCAACAAAAAAUAC__ ...................................((.(((((......(((((((..((((................))))..)))))))....))))).)).............. (-12.45 = -12.26 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:43 2006