Locus 3749

Sequence ID 3R_DroMel_CAF1
Location 10,170,556 – 10,170,671
Length 115
Max. P 0.505602
window6010

overview

Window 0

Location 10,170,556 – 10,170,671
Length 115
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 82.60
Mean single sequence MFE -35.78
Consensus MFE -24.30
Energy contribution -23.55
Covariance contribution -0.75
Combinations/Pair 1.33
Mean z-score -1.51
Structure conservation index 0.68
SVM decision value -0.05
SVM RNA-class probability 0.505602
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10170556 115 - 27905053
CAACUAUAGCAGUCCGCUGACCAUACCGCCCACCUCGAUGACCACGCACAUGGUCAGUCCCAUCGGGAACAGCAAGGAGAAGCUGGUGAAUAUGUUGCGCGUGCGUGACAACAAC
((....((((..(((((((...................((((((......)))))).((((...)))).))))..)))...)))).))....(((..((....))..)))..... ( -30.90)
>DroVir_CAF1 29775 103 - 1
UGUCUACAGCAGCUCAUUGACUAUACCGCCC---UCGGCGGCAUCA---AUGGUCAGUCCC------AGCAGCAAGGAGAAGCUGGUUAAUAUGCUGCGCGUGCGCGAUAACAAC
((((....(((((..(((((((((.(((((.---..))))).....---))))))))).((------(((..(.....)..))))).......)))))((....))))))..... ( -35.40)
>DroPse_CAF1 32419 106 - 1
UGUGUACAGCAGUCCUUUGACCAUACCGCCCACAUCCGUGUCAUCG---AUGGUCAGUCCG------AGCAGCAAGGAGAAGCUGGUCAACAUGCUGCGCGUGCGCGACAACAAC
.((((((.(((((...((((((((......(((....)))......---))))))))...(------(.((((........)))).)).....)))))..))))))......... ( -36.90)
>DroGri_CAF1 32210 103 - 1
UGUCUACAGCAGCUCAUUGACCAUACCGCCA---UCGGCGGCCUCA---AUGGUCAGUCCC------AGCAGCAAGGAGAAGCUGGUGAAUAUGCUGCGUGUACGCGAUAACAAC
.((.(((((((((..(((((((((.(((((.---..))))).....---)))))))))..(------(.((((........)))).)).....))))).)))).))......... ( -39.10)
>DroMoj_CAF1 33406 103 - 1
UGUCUACAGCAGCUCAUUGACAAUACCGCCC---UCGGCGGCGUCA---AUGGUCAGCCCC------AGCAGCAAGGAGAAGCUGGUCAAUAUGCUGCGAGUGCGCGAUAAUAAC
.((.(((.(((((((((((((....(((((.---..))))).))))---))))......((------(((..(.....)..))))).......)))))..))).))......... ( -35.50)
>DroPer_CAF1 32656 106 - 1
UGUGUACAGCAGUCCUUUGACCAUACCGCCCACAUCCGUGUCAUCG---AUGGUCAGUCCG------AGCAGCAAGGAGAAGCUGGUCAACAUGCUGCGCGUGCGCGACAACAAC
.((((((.(((((...((((((((......(((....)))......---))))))))...(------(.((((........)))).)).....)))))..))))))......... ( -36.90)
>consensus
UGUCUACAGCAGCCCAUUGACCAUACCGCCC___UCGGCGGCAUCA___AUGGUCAGUCCC______AGCAGCAAGGAGAAGCUGGUCAAUAUGCUGCGCGUGCGCGACAACAAC
(((.(((.(((((...((((((((..((((......)))).........))))))))............((((........))))........)))))..))).)))........ (-24.30 = -23.55 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:08 2006