Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,163,310 – 10,163,400 |
Length | 90 |
Max. P | 0.719533 |
Location | 10,163,310 – 10,163,400 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.77 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -21.93 |
Energy contribution | -22.10 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.85 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10163310 90 + 27905053 ---GCACCUGAGUGGCAAUUACAUUCGGGUU----UAUGAGC-GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG ---(((((((((((.......))))))))).----.....))-..(((..((((..(((.....)))...))))...))).((((((....)))))). ( -23.60) >DroPse_CAF1 24051 98 + 1 CGCGCACCUGAGUGGCAAUUACAUUCGGGUUACAUUAUGAGCCCUGCGUGGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGCGACAGUUG ....((.(((.(((((((((......(((((........)))))((((((((((..(((.....)))...))))).))))))))))))))..))).)) ( -30.90) >DroSim_CAF1 20906 90 + 1 ---GCACCUGAGUGGCAAUUACAUUCGGGUU----UAUGAGC-GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG ---(((((((((((.......))))))))).----.....))-..(((..((((..(((.....)))...))))...))).((((((....)))))). ( -23.60) >DroEre_CAF1 21924 90 + 1 ---GCACCUGAGUGGCAAUUACAUUCGCGUU----UAUGAGC-GAGCGCUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG ---.((.(((..((((((((....((((...----.....))-))(((..((((..(((.....)))...))))...))).))))))))...))).)) ( -23.20) >DroYak_CAF1 21369 90 + 1 ---GCACCUGAGUGGCAAUUACAUUCGGGUU----UAUGAGC-GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG ---(((((((((((.......))))))))).----.....))-..(((..((((..(((.....)))...))))...))).((((((....)))))). ( -23.60) >DroPer_CAF1 24422 98 + 1 CGCGCACCUGAGUGGCAAUUACAUUCGGGUUACAUUAUGAGUCCUGCGUGGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGCGACAGUUG ((((((((((((((.......)))))))))..............((((((((((..(((.....)))...))))).)))))....).))))....... ( -29.60) >consensus ___GCACCUGAGUGGCAAUUACAUUCGGGUU____UAUGAGC_GAGCGAUGGCAAACAUUUAAAAUGAAAUGCCUAAUGCAAAUUGUCGAGACAGUUG .....(((((((((.......)))))))))...............(((..((((..(((.....)))...))))...))).((((((....)))))). (-21.93 = -22.10 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:02 2006