Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,162,914 – 10,163,009 |
Length | 95 |
Max. P | 0.999025 |
Location | 10,162,914 – 10,163,009 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 85.86 |
Mean single sequence MFE | -36.04 |
Consensus MFE | -30.48 |
Energy contribution | -30.68 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -3.16 |
Structure conservation index | 0.85 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10162914 95 - 27905053 AUGGUCAAUUGCAUGGUCGUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG---CAGCAGCAAUA---GCAGCAGUUUCACUGGCAUUUGGCCAAAU .(((((((...((..((((((((......))))))))..)).(((((.....(((---(.((.((....---)).)).))))..)))))..)))))))... ( -36.00) >DroSec_CAF1 21409 83 - 1 AUGGUCAAUUGCAUGGUCGUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG---CG---------------GCAGUUUCACUGGCAGUUGGCCAAAU .(((((((((((...((((((.(.((((((..........))))))...)...))---))---------------))((.....)).)))))))))))... ( -35.10) >DroSim_CAF1 20488 83 - 1 AUGGUCAAUUGCAUGGUCUUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG---CG---------------GCAGUUUCACUGGCAGUUGGCCAAAU .(((((((((((...(.(((((..((((((..........))))))...)).)))---).---------------.(((.....))))))))))))))... ( -33.20) >DroEre_CAF1 21535 95 - 1 AUGGUCAAUUGCAUGGUCGGUGGAUGGCCCUAGCGAUUGUGGGCCAGAAAACAAG---CACCGGUAGCA---GCAGCAGUUUCACUGGCAGUUGGCCAAAU .(((((((((((....((((((..((((((..........))))))(....)...---)))))).....---....(((.....))))))))))))))... ( -37.20) >DroYak_CAF1 20943 101 - 1 UUGGUCAAUUGCAUGGUCGGUGGAUGGCCCUAGCGAUUGUGGGCCAGAAAACAAGUAGCAGCAGUAGCAGUGGCAGCAGUUUCACUGGCAGUUGGCCAAAU ((((((((((((.....(((((((((((((..........))))))........((.((.((....))....)).))...))))))))))))))))))).. ( -38.70) >consensus AUGGUCAAUUGCAUGGUCGUUGGAUGGCCCUAGCGAUUGUGGGCCAGAACACAAG___CA_C_G_A__A___GCAGCAGUUUCACUGGCAGUUGGCCAAAU .(((((((((((............((((((..........))))))..............................(((.....))))))))))))))... (-30.48 = -30.68 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:01 2006