Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,155,285 – 10,155,400 |
Length | 115 |
Max. P | 0.966131 |
Location | 10,155,285 – 10,155,400 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 75.78 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -12.72 |
Energy contribution | -12.40 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.20 |
Mean z-score | -2.27 |
Structure conservation index | 0.59 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10155285 115 - 27905053 CGUUAUCGUGUUAAUCAGGUCAUCAGAAAACCUUUUGUUCCUGAAAAGAAAUAAGAAAAGCAUGUUUUCUAAAUUUGUUUUUAUAUAUUUUAAUGAUACCUAAACCUGAUUGGCA ........((((((((((((..((((..(((.....))).))))...((((((..(((((((.(((.....))).)))))))...))))))............)))))))))))) ( -24.20) >DroEre_CAF1 14033 92 - 1 CGUUAUCGU--UAUUCAGGUCAUCAAAAAA------------UAAGAGAAGCAU---------GUUUCCUAAAUUCAUUUUUGUAUAUUUUAAUGUUAACGAAACCUGAAUGGCA .......((--(((((((((..........------------..((.((((...---------.)))))).........(((((((((....))))..)))))))))))))))). ( -18.00) >DroYak_CAF1 13079 92 - 1 CGUUAUCGU--UAUUCAGGUCAUCAAAAAA------------UAAGCGAAGCAU---------GUUUCCUAAAUUCGUUUUUAUAUAUUUUAAUGUUAACGAAACCUGAAUGGCA .......((--(((((((((..........------------..((.((((...---------.))))))...((((((..(((........)))..))))))))))))))))). ( -22.90) >consensus CGUUAUCGU__UAUUCAGGUCAUCAAAAAA____________UAAGAGAAGCAU_________GUUUCCUAAAUUCGUUUUUAUAUAUUUUAAUGUUAACGAAACCUGAAUGGCA .......((..(((((((((...........................(((((...........))))).....((((((..(((........)))..))))))))))))))))). (-12.72 = -12.40 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:57 2006