Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,151,126 – 10,151,275 |
Length | 149 |
Max. P | 0.825472 |
Location | 10,151,126 – 10,151,235 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 85.78 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -18.98 |
Energy contribution | -21.06 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.19 |
Mean z-score | -2.93 |
Structure conservation index | 0.60 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10151126 109 - 27905053 CCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCUAUGGAAAAUCAAAGCCGUGGCUUAUCAAAUCCUCCAAAUCAGGAGGAAUCCCCUCACCAAUGGGGUGAACCAGCA ...((.(((................((.(((((.((((..........))))))))).))...((((((......)))))).)))))(((((.....)))))....... ( -33.80) >DroSec_CAF1 9734 109 - 1 CCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCAUUGGAAAAUCAAAGCCAUGGCUUAUCAAGUCCUCCAAACCAGGAGGAAUGCCCUCACGAAUGGGGUGAACCAGCA (((.((((.............(((.((.(((((((.((..........))))))))).)))))((((((......))))))....)))).....)))((....)).... ( -33.90) >DroSim_CAF1 8820 109 - 1 CCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCUUUGGAAAAUCAAAUCCAUGGCUUAUCAAGUCCUCCAAAUCUGGAGGAAUCCCCUCACGAAUGGGGUGAACCAGCA (((.((((.............(((.((.(((((..((((........)))).))))).)))))(((((((....)))))))....)))).....)))((....)).... ( -35.70) >DroEre_CAF1 9911 109 - 1 CCAGGAGGAAAGUUCAAGUAACUUAGAAAAGCCUGUGAAAUAUCAAAGCCAAGGCUUAUCAAAUUCCCAAAGUCAGGAGGAAUCCCCUAGCGAAUGGGGUCUGACAGCA ...((.((((((((.....))))).((.((((((.(((....)))......)))))).))...)))))...((((((......((((........)))))))))).... ( -27.80) >DroYak_CAF1 8940 109 - 1 CAGUGCGGAAAGUUCAAGUAACUUAGAAAAGCCUUUGAAUAAUCAAAGCUCAGGCUUAUCCACUACCCAAAAUCCGGAGGAAUCCCCUUACGAAUGGGGUGAACCAGCA ...(((((((((((.....)))))....((((((((((....)))).....)))))).)))..(((((...((.((((((.....)))).)).)).))))).....))) ( -26.30) >consensus CCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCUUUGGAAAAUCAAAGCCAUGGCUUAUCAAAUCCUCCAAAUCAGGAGGAAUCCCCUCACGAAUGGGGUGAACCAGCA ...........(((((.........((.((((((.(((..........))))))))).))...((((((......))))))..((((........)))))))))..... (-18.98 = -21.06 + 2.08)
Location | 10,151,155 – 10,151,275 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -34.52 |
Consensus MFE | -22.42 |
Energy contribution | -23.54 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.17 |
Mean z-score | -2.32 |
Structure conservation index | 0.65 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10151155 120 + 27905053 CCUCCUGAUUUGGAGGAUUUGAUAAGCCACGGCUUUGAUUUUCCAUAGGCUUUUCUAAGGUAUUUGAACUUUCCUCCUGGGCUUCCAAACUUCUAAAGCUUUCUUCUGGCUGGGAGGUAU ((((((...(((((((.((((..(((((..(((((((......)).))))).....(((((......))))).......))))).)))))))))))((((.......))))))))))... ( -32.40) >DroSec_CAF1 9763 120 + 1 CCUCCUGGUUUGGAGGACUUGAUAAGCCAUGGCUUUGAUUUUCCAAUGGCUUUUCUAAGGUAUUUGAACUUUCCUCCUGGGCUUCAAGACUUCUAAAGCUUUCUUCUGGCUGGGAGGUAU (((((..(((.(((((((((((.(((((((((..........)).))))))).)).)))((......))..)))))).((((((..((....)).))))))......)))..)))))... ( -39.20) >DroSim_CAF1 8849 120 + 1 CCUCCAGAUUUGGAGGACUUGAUAAGCCAUGGAUUUGAUUUUCCAAAGGCUUUUCUAAGGUAUUUGAACUUUCCUCCUGGGCUUCAAGACUUCUAAAGCUUUCUUCUGGCUGGGAGGUAU (((((......))))).(((((.(((((.((((........))))..))))).)).))).............(((((..(.((..((((............))))..)))..)))))... ( -37.10) >DroEre_CAF1 9940 120 + 1 CCUCCUGACUUUGGGAAUUUGAUAAGCCUUGGCUUUGAUAUUUCACAGGCUUUUCUAAGUUACUUGAACUUUCCUCCUGGACUUCCAAACUUCUAAAGCUUUCUUCUUGUUGGGGGGUAU (((((..((....(((((.....((((....))))....)))))..(((((((...(((((....(((...(((....))).)))..)))))..))))))).......))..)))))... ( -31.00) >DroYak_CAF1 8969 120 + 1 CCUCCGGAUUUUGGGUAGUGGAUAAGCCUGAGCUUUGAUUAUUCAAAGGCUUUUCUAAGUUACUUGAACUUUCCGCACUGGCUUCCAAACUUCUAAAGCUUUCUUCUUGUUGGGGGGUAU ((((((((.((..((((.((((.((((((.....((((....)))))))))).))))...))))..))...))).....(((((...........)))))...........))))).... ( -32.90) >consensus CCUCCUGAUUUGGAGGACUUGAUAAGCCAUGGCUUUGAUUUUCCAAAGGCUUUUCUAAGGUAUUUGAACUUUCCUCCUGGGCUUCCAAACUUCUAAAGCUUUCUUCUGGCUGGGAGGUAU ((((((((((.((((((......((((....))))............((((((...(((......(((...(((....))).)))....)))..)))))))))))).))))))))))... (-22.42 = -23.54 + 1.12)
Location | 10,151,155 – 10,151,275 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -19.94 |
Energy contribution | -21.18 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.20 |
Mean z-score | -2.18 |
Structure conservation index | 0.67 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10151155 120 - 27905053 AUACCUCCCAGCCAGAAGAAAGCUUUAGAAGUUUGGAAGCCCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCUAUGGAAAAUCAAAGCCGUGGCUUAUCAAAUCCUCCAAAUCAGGAGG ...(((((.............(((((.........)))))...((((((..((......))....((.(((((.((((..........))))))))).))...))))))......))))) ( -32.40) >DroSec_CAF1 9763 120 - 1 AUACCUCCCAGCCAGAAGAAAGCUUUAGAAGUCUUGAAGCCCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCAUUGGAAAAUCAAAGCCAUGGCUUAUCAAGUCCUCCAAACCAGGAGG ...(((((.............(((((((.....)))))))...((((((..((......))(((.((.(((((((.((..........))))))))).)))))))))))......))))) ( -35.30) >DroSim_CAF1 8849 120 - 1 AUACCUCCCAGCCAGAAGAAAGCUUUAGAAGUCUUGAAGCCCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCUUUGGAAAAUCAAAUCCAUGGCUUAUCAAGUCCUCCAAAUCUGGAGG ...(((((.((..........(((((((.....)))))))...((((((..((......))(((.((.(((((..((((........)))).))))).)))))))))))....))))))) ( -36.10) >DroEre_CAF1 9940 120 - 1 AUACCCCCCAACAAGAAGAAAGCUUUAGAAGUUUGGAAGUCCAGGAGGAAAGUUCAAGUAACUUAGAAAAGCCUGUGAAAUAUCAAAGCCAAGGCUUAUCAAAUUCCCAAAGUCAGGAGG ....((.((.....((((....)))).((..((.((((.(((....)))(((((.....))))).((.((((((.(((....)))......)))))).))...)))).))..)).)).)) ( -23.20) >DroYak_CAF1 8969 120 - 1 AUACCCCCCAACAAGAAGAAAGCUUUAGAAGUUUGGAAGCCAGUGCGGAAAGUUCAAGUAACUUAGAAAAGCCUUUGAAUAAUCAAAGCUCAGGCUUAUCCACUACCCAAAAUCCGGAGG ....((.((.....((((....))))....((.((((((((.(.((.((..(((((((...(((....)))..)))))))..))...)).).))))..))))..)).........)).)) ( -22.60) >consensus AUACCUCCCAGCCAGAAGAAAGCUUUAGAAGUUUGGAAGCCCAGGAGGAAAGUUCAAAUACCUUAGAAAAGCCUUUGGAAAAUCAAAGCCAUGGCUUAUCAAAUCCUCCAAAUCAGGAGG ...(((((.............(((((.........)))))...(((((((((.........))).((.((((((.(((..........))))))))).))...))))))......))))) (-19.94 = -21.18 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:56 2006