Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,423,401 – 1,423,500 |
Length | 99 |
Max. P | 0.744676 |
Location | 1,423,401 – 1,423,500 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.96 |
Mean single sequence MFE | -21.85 |
Consensus MFE | -17.61 |
Energy contribution | -16.58 |
Covariance contribution | -1.03 |
Combinations/Pair | 1.22 |
Mean z-score | -1.34 |
Structure conservation index | 0.81 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1423401 99 - 27905053 AAAGCAAGUAAGUUUUUAGUUGUG------AUUUGUUUUUAGCCCCGGAAUGUUCUCAGGAAGAUGACUCAAUGAUCCAGUUGUGCAUCUUUAAUUGAUAUUCCU (((((((((..(........)...------))))))))).......((((((((.....(((((((.(.((((......)))).))))))))....)))))))). ( -22.80) >DroPse_CAF1 6325 98 - 1 AAAGCAAGUAAGUUUUAAAUUUAGACUGUAGUCUCUU-------AUGGAAUGUUCUCAGGAAGAUGUUAUAACCAUUCAGUUGUGUAUCUUUAAUUGAUGUUCCU (((((......)))))......((((....))))...-------..((((((((.....((((((((.(((((......)))))))))))))....)))))))). ( -18.00) >DroSec_CAF1 5296 99 - 1 AAAGCAAGUAAGUUUUUAGUUGUG------AUUUGUUUUUAGCCCCGGAAUGUUCUCAGGAAGAUGACUCAAUGAUCCAGUUGUGCAUCUUUAAUUGAUAUUCCU (((((((((..(........)...------))))))))).......((((((((.....(((((((.(.((((......)))).))))))))....)))))))). ( -22.80) >DroEre_CAF1 5470 97 - 1 AAAGCAAGUAAGUUUAUA-----GAUUG--AUUUGUUUCUAGC-CCGGAAUGUUCUCAGGAAGAUGUCUCGAUCACCCAGUUGUGCAUCUUUAAUUGAUAUUCCU .((((((((.((((....-----)))).--)))))))).....-..((((((((.....((((((((..((((......)))).))))))))....)))))))). ( -24.40) >DroYak_CAF1 5901 102 - 1 AAAGCAAGUAAGUUUAUAAGUCUGAUUU--GUUUGUUUUCAGC-CCGGAAUGUUCUCAGGAAGAUGACUCAAUCAUUCAGUUGUACAUCUUUAAUUGAUAUUCCU ((((((((((((((.........)))))--)))))))))....-..((((((((.....(((((((...((((......))))..)))))))....)))))))). ( -23.60) >DroPer_CAF1 5992 98 - 1 AAAGCAAGUAAGUUUUAAAUUUAGACUGCAGUCUGUU-------AUGGAAUGUUCUCAGGAAGAUGUUAUAACCAUUCAGUUGUGUAUCUUUAAUUGAUGUUCCU (((((......))))).....(((((....)))))..-------..((((((((.....((((((((.(((((......)))))))))))))....)))))))). ( -19.50) >consensus AAAGCAAGUAAGUUUUUAAUUGUGA_UG__AUUUGUUUUUAGC_CCGGAAUGUUCUCAGGAAGAUGACUCAAUCAUCCAGUUGUGCAUCUUUAAUUGAUAUUCCU .((((......))))...............................((((((((.....(((((((...((((......))))..)))))))....)))))))). (-17.61 = -16.58 + -1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:42 2006