Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,133,731 – 10,133,825 |
Length | 94 |
Max. P | 0.958269 |
Location | 10,133,731 – 10,133,825 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 78.06 |
Mean single sequence MFE | -29.58 |
Consensus MFE | -18.92 |
Energy contribution | -20.15 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.17 |
Mean z-score | -2.26 |
Structure conservation index | 0.64 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10133731 94 - 27905053 UUAGCAGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAGUAAAUCACGUGCCUAAAAGUAGACUAAAGCGGUCAC---UGGUUAU .((((.((((((((((...(((..--(.....)..-)))..((((((---(.........))))))))))))))))).((((.....))))..---..)))). ( -31.10) >DroVir_CAF1 24447 100 - 1 UGCGCUGCUUCUAGGCGU-UGCUGACGUGACGCUGGGCGAAGA--GAUCGAUUUAAAUAAAUCACGAGCCUGAAAGUAGGCUAACUUACGCAAUCCCAUUGAU ((((.((((....(((((-..(....)..))))).))))..((--(...(((((....)))))...((((((....))))))..))).))))........... ( -28.30) >DroSim_CAF1 8860 94 - 1 UUAGCUGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAAUAAAGCACGUGCCUAAAAGUAGACUAAAGCGGGCAC---UGGUGAU (((((((((((((((((((((((.--.(((.(((.-((.....)).)---.)))))....))))))))))))))))))).)))).........---....... ( -32.30) >DroEre_CAF1 9350 92 - 1 UUAGCUGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAAUAAAUCACGUGCCUAAAAGUAGACUAAGGCGGACA-----AGUGAU ((((((((((((((((...(((..--(.....)..-)))..((((((---(.........))))))))))))))))))).))))........-----...... ( -32.80) >DroYak_CAF1 9317 94 - 1 UUAGCUGCUUUUGGGCGUGUGUUG--GUGACGCUG-GCAAAAUGUGA---UGUUCAAUAAAUCACGUGCCUAAAAGUAGACUAAGGCGGGCAG---CAGUGAU ((((((((((((((((...(((..--(.....)..-)))..((((((---(.........))))))))))))))))))).)))).((.....)---)...... ( -34.50) >DroAna_CAF1 8682 90 - 1 GGAGCUGUUUUUAGGCG----UUG--CUGACGCUG-GCAAAAUCAAA---UUUUCAAUAAGUCACGUGCCUAAAAGUAGGCUAUCCCAGGGUU---AAUUGAU ((((((..(((((((((----(((--((......)-))))......(---(((.....))))....)))))))))...))))...))......---....... ( -18.50) >consensus UUAGCUGCUUUUGGGCGUGUGUUG__GUGACGCUG_GCAAAAUGUGA___UGUUCAAUAAAUCACGUGCCUAAAAGUAGACUAAAGCGGGCAC___CAGUGAU (((((((((((((((((((((......(((.......................)))......))))))))))))))))).))))................... (-18.92 = -20.15 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006