Locus 3734

Sequence ID 3R_DroMel_CAF1
Location 10,132,537 – 10,132,657
Length 120
Max. P 0.719986
window5985

overview

Window 5

Location 10,132,537 – 10,132,657
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.33
Mean single sequence MFE -40.80
Consensus MFE -25.69
Energy contribution -26.50
Covariance contribution 0.81
Combinations/Pair 1.26
Mean z-score -1.65
Structure conservation index 0.63
SVM decision value 0.40
SVM RNA-class probability 0.719986
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10132537 120 - 27905053
UUUCCUUGCUCCAUUUGCAAUGCCAACUUGCGCAGCGAGGCCUUGUUGGCGCUCCACGAGGAACAGCACAAGUCACGUGGCAAGCCGUAUGCAUGCAAGAUCUGCGGCAAGGACUUCACC
..((((((((.((((((((.((((((((((.((......(((.....)))(.(((....))).).)).)))))....))))).((.....)).))))))...)).))))))))....... ( -41.50)
>DroVir_CAF1 23278 120 - 1
UAUCCGUGCUCCAUUUGCAAUGCCAAGCUGAGGAGCGGCGCGCUGCUUAAGCUGCACGAGCAGCAGCAUCAAUUGCGCGGCAAGCCGUUUGCCUGCAAAAUCUGUGGCAAGGACUUUACG
..(((..(((((.((.((........)).)))))))(((..(((((....(((((....))))).(((.....))))))))..)))..(((((.(((.....)))))))))))....... ( -47.90)
>DroGri_CAF1 20512 120 - 1
UAUCCCUGCUCCAUAUGCAAUGCGAAAUUGCGCAGCGCUGCCUUACUCAAACUGCACGAGCAGCAGCAUCAAUUGCGUGGCAAACCCUUCGCCUGCAAGAUCUGUGGCAAGGAUUUUACG
.((((.(((..((...(((((.....)))))((((.((((((.........((((....))))..(((.....)))..))))........))))))......))..))).))))...... ( -35.30)
>DroWil_CAF1 23087 120 - 1
UUUCCCUGUUCCAUUUGCAAUGCAAAUUUACGCAGCGGACCUCUUCUGACGCUGCACGAGGAGCAGCACAAGAAUCGCGGCAAGCCCUAUGCUUGCAAGAUCUGUGGCAAGGAUUUCACA
..((((((((((((((((...))))))....((((((............))))))....)))))))((((.((.((...((((((.....))))))..))))))))....)))....... ( -42.40)
>DroMoj_CAF1 8439 120 - 1
UUUCCAUGCUCCAUUUGCAAUGCCAAGCUGCGCAGCUCUGCUCUGCUGAAGUUGCACGAACAGCAGCACCAGUCCAGGGGCAAGCCCUUCGCCUGCAAGAUCUGCGGCAAGGACUUUACG
......((((.....((((((....(((.(.(((....))).).)))...)))))).....)))).....((((((((((....))))).(((.(((.....))))))..)))))..... ( -39.40)
>DroAna_CAF1 7478 120 - 1
UAUCCAUGCUCUAUUUGUAAUGCCAACCUUCGCAGCGAGGCCUUGUUGAAGCUGCACGAGGAGCAGCACAAAUCACGGGGCAAGCCCUACGCCUGCAAGAUCUGCGGCAAGGACUUCACG
..(((.((((((((((((..(((...((((.(((((..(((...)))...)))))..)))).)))..))))))...))))))........(((.(((.....))))))..)))....... ( -38.30)
>consensus
UAUCCAUGCUCCAUUUGCAAUGCCAACCUGCGCAGCGAGGCCCUGCUGAAGCUGCACGAGCAGCAGCACAAAUCACGCGGCAAGCCCUACGCCUGCAAGAUCUGCGGCAAGGACUUCACG
..(((.(((..((((((((.((((........((((((....))))))..(((((.......)))))...........)))).((.....)).))))))...))..))).)))....... (-25.69 = -26.50 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:44 2006