Locus 3733

Sequence ID 3R_DroMel_CAF1
Location 10,128,602 – 10,128,706
Length 104
Max. P 0.813039
window5984

overview

Window 4

Location 10,128,602 – 10,128,706
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 74.94
Mean single sequence MFE -36.67
Consensus MFE -13.90
Energy contribution -12.68
Covariance contribution -1.22
Combinations/Pair 1.48
Mean z-score -2.28
Structure conservation index 0.38
SVM decision value 0.65
SVM RNA-class probability 0.813039
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10128602 104 - 27905053
GGGAAAUCACCACCUGAUCCACAAUGCUGUCCCACUCCAAGUUCUUUUCCGCAACACUGGCCAUCGCCUGGAGGAGCUCAUUGGUGAGCUCCGGUUCCUGGCCA
((((.((((.....))))...........)))).........................(((((..(((....((((((((....)))))))))))...))))). ( -30.00)
>DroVir_CAF1 18883 104 - 1
CGCUAGCCAGCACCUGCUGCACUGCAUCAUGCCAGUCCAAUUGCUGCUCCACGACGCUGGCCAUCGCCUGUAGCAGUUCGUUGGUCAGCCUUGGCUCGUGCCCC
.(((..(((((..((((((((..((.....((((((....(((........))).))))))....)).))))))))...)))))..)))...(((....))).. ( -37.40)
>DroPse_CAF1 3958 104 - 1
CAGCCAUCAACACCUGCUCGACAGCCUUCUGCCAGUCCAAGCUCUGCUCAGCCACACUGGCCAUAGCCUGGAGCAGCUCGUUGGUUAGCUCGGGCUCUUGCCCA
.(((.((((((..((((((..(((.((...((((((....(((......)))...))))))...)).)))))))))...))))))..))).((((....)))). ( -39.40)
>DroEre_CAF1 4141 104 - 1
GGGAAAUCACCACCUGGUCCACAACGCUGUCCCACUCCAGGUUCUUUUCCGCCACACUGGCCAUGGCCUGGAGGAGUUCAUUGGUGAGCUCCGGUUCCUGGCCA
.(((((.....((((((...(((....)))......))))))...)))))(((.....)))..(((((.(((((((((((....))))))))...))).))))) ( -41.40)
>DroAna_CAF1 3695 104 - 1
GAGCUCCUACAACCUGAUCUACGGCACUCUUCCAAUCGAGAUUCUUCUCCGCUACACUGGCCAUUGCUUGGAGUAGUUCAUUGGUGAGCUCCGGCUCCUGGCCA
((((((...(((..(((.(((((.....).(((((.(((((....)))).(((.....)))....).))))))))).))))))..)))))).(((.....))). ( -29.80)
>DroPer_CAF1 4061 104 - 1
CAGCCACCAACACCUGCUCGACAGCCUUCUGCCAGUCCAAGCUCUGCUCAGCCACACUGGCCAUAGCCUGGAGCAGCUCGUUGGUUAGCUCGGGCUCUUGCCCA
.(((.((((((..((((((..(((.((...((((((....(((......)))...))))))...)).)))))))))...))))))..))).((((....)))). ( -42.00)
>consensus
CAGCAACCACCACCUGCUCCACAGCACUCUGCCAGUCCAAGUUCUGCUCCGCCACACUGGCCAUAGCCUGGAGCAGCUCAUUGGUGAGCUCCGGCUCCUGCCCA
..............................((..(.((((...((((((((.......(((....)))))))))))....)))).)(((....)))...))... (-13.90 = -12.68 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:43 2006