Locus 3732

Sequence ID	3R_DroMel_CAF1
Location	10,125,229 – 10,125,321
Length	92
Max. P	0.994345

overview

Window 3

Location	10,125,229 – 10,125,321
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	93.66
Mean single sequence MFE	-23.76
Consensus MFE	-20.70
Energy contribution	-20.90
Covariance contribution	0.20
Combinations/Pair	1.08
Mean z-score	-2.07
Structure conservation index	0.87
SVM decision value	2.47
SVM RNA-class probability	0.994345
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10125229 92 - 27905053
AAAGGCUGAAUUCUAAGAUCAAUAAAUUCAAAUGAAGCAGCUGACAUUUAACAUUCAAAG-GGUUAGCAUGUCAGCAGUGCCUUUUUUUUUGC
((((((((((((............)))))).........(((((((((((((........-.))))).))))))))...))))))........ ( -22.90)
>DroSec_CAF1 711 90 - 1
AAAGGCUGCAUUCUAAGAUCAAUAAAUUCAAAUGAAGCAGCUGACAUUUAGCAUUCAAAG-GGUUAGCGUGUCAGCAGUGGCUUUU--GUUGU
((((((..(.................(((....)))...(((((((((((((........-.))))).)))))))).)..))))))--..... ( -24.20)
>DroSim_CAF1 738 90 - 1
AAAGGCUGCAUUCUAAGAUCAAUAAAUUCAAAUGAAGCAGCUGACAUUUAGCAUUCAAAG-GGUUAGCGUGUCAGCAGUGGCUUUU--GUUGU
((((((..(.................(((....)))...(((((((((((((........-.))))).)))))))).)..))))))--..... ( -24.20)
>DroEre_CAF1 699 91 - 1
AAAGGCAGCAUUUUGAGAUCAAUAAAUUCAAAUGAAGCGGCUGACAUUUAACAUUCAAAGGGGUUAGCGUGUCAGCAGUGGCUUUU--GUUGU
....((((((.((((((.........)))))).(((((.(((((((((((((..........))))).))))))))....))))))--))))) ( -23.60)
>DroYak_CAF1 673 91 - 1
AAAGGCUGCAUUCUAAGAUCAAUAAAUUCAAAUGAAGCGGCUGACAUUUAACAUUCAAAGGGGUUAGCGUGUCAGCAGUGGCUUUU--GUUGU
((((((..(.................(((....)))...(((((((((((((..........))))).)))))))).)..))))))--..... ( -23.90)
>consensus
AAAGGCUGCAUUCUAAGAUCAAUAAAUUCAAAUGAAGCAGCUGACAUUUAACAUUCAAAG_GGUUAGCGUGUCAGCAGUGGCUUUU__GUUGU
(((((((((.................(((....)))...(((((((((((((..........))))).)))))))).)))))))))....... (-20.70 = -20.90 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:42 2006