Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,124,934 – 10,125,042 |
Length | 108 |
Max. P | 0.789046 |
Location | 10,124,934 – 10,125,042 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 97.55 |
Mean single sequence MFE | -27.43 |
Consensus MFE | -26.22 |
Energy contribution | -26.22 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.96 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10124934 108 + 27905053 UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUU-CUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAUUGACAUCUAAUCUUCAUGGAAUAAU ((((((..(((((....)))))(((((.((....)).))))).-...))))))......(((((.(((................))))))))..(((....)))..... ( -26.49) >DroSec_CAF1 416 109 + 1 UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAUUGACAUCUAAUCUUCAUGGAAUAAU ((((((..(((((....)))))(((((.((....)).))))).....))))))......(((((.(((................))))))))..(((....)))..... ( -26.49) >DroSim_CAF1 443 109 + 1 UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUGCCUCCCUUUAUUAUUGACAUCUAAUCUCCAUGGAAUAAU ((.(((.((((((....))))))...)))))...(((((((...((((((((((.....(((.((....)).)))........)))))).)))).....)))))))... ( -29.32) >consensus UGACACGUGGGGCAGAAGCUCCAACAGUGCACAAGUUCUGUUUUUUAGUGUCAACUCACGGAUGCUCAUACCUCCCUUUAUUAUUGACAUCUAAUCUUCAUGGAAUAAU ((((((..(((((....)))))(((((.((....)).))))).....))))))......(((((.(((................))))))))..(((....)))..... (-26.22 = -26.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:41 2006