Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,423,055 – 1,423,174 |
Length | 119 |
Max. P | 0.564595 |
Location | 1,423,055 – 1,423,174 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -33.99 |
Consensus MFE | -25.26 |
Energy contribution | -23.68 |
Covariance contribution | -1.58 |
Combinations/Pair | 1.48 |
Mean z-score | -2.48 |
Structure conservation index | 0.74 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1423055 119 + 27905053 UUAUCUCAUUAUAUGGCUUCUCAUCGUUGAUAUCAUCGAUGAGCGCCUGCUGCAACUCACGCUUCGCCUCCUGGCUAGCCUGAGCCUUAUGUAGCUUGACGAUCUCGUUAAGUUCUUUG ..............(((..(((((((.((....)).))))))).))).((((((.((((.(((..(((....))).))).)))).....))))))((((((....))))))........ ( -39.70) >DroVir_CAF1 4636 119 + 1 UUAUUUCAUUAUGUGCCUUCUCAUCGUUAAUAUCAUCGAUGAGGGUCUGCUGCAGUUCACGUUUGGCCUCUUGGCUGGCCUGAGCCUUAUGCAAUUUUAUGAUCUCAUUGAGUUCUUUG ..............((.(((((((((..........)))))))))...))(((((((((.(.(..(((....)))..)).)))))....)))).......((.(((...))).)).... ( -27.80) >DroGri_CAF1 4961 119 + 1 UUAUCUCAUUAUGUGCCUUCUCGUCAUUAAUAUCAUCGAUGAGGGUCUGCUGCAGUUCACGUUUGGCCUCUUGGCUGGCCUGUGCCUUAUGCAACUUAAUGAUCUCAUUGAGUUCUUUG ............(((((((((((.............))).))))))..)).(((...((((.(..(((....)))..)..)))).....)))(((((((((....)))))))))..... ( -29.52) >DroWil_CAF1 5090 119 + 1 UUAUUUCAUUAUGCGCCUUCUCGUCAUUAAUAUCAUCGAUGAGUGUUUGUUGGAGCUCACGCUUAGCCUCUUGGCUAGCCUGUGCUUUAUGCAAUUUGAUGAUCUCAUUAAGUUCUUUG ...........((((....((((((............)))))).......((((((.((.(((.((((....))))))).)).))))))))))((((((((....))))))))...... ( -31.30) >DroMoj_CAF1 6352 119 + 1 UUAUCUCAUUGUGUGCCUUUUCGUCGUUAAUAUCGUCAAUGAGGGUCUGCUGCAGUUCACGUUUGGCCUCUUGGCUAGCCUGCGCUUUAUGCAAUUUAAUGAUCUCAUUGAGUUCUUUG ..........((..((((((..(.((.......)).)...))))))..)).((((.....(((.((((....)))))))))))((.....))(((((((((....)))))))))..... ( -26.30) >DroAna_CAF1 4898 119 + 1 UUAUCUCAUUGUGGGCCUUCUCAUCGUUGAUAUCAUCGAUGAGAGCCUGCUGCAGCUCGCGCUUAGCCUCCUGGCUAGCCUGAGCCUUGUGCAGCUUGAUGAUCUCAUUGAGUUCCUUG ....((((.((.((((..((((((((.((....)).))))))))))))(((((((((((.(((.((((....))))))).)))))....))))))..........)).))))....... ( -49.30) >consensus UUAUCUCAUUAUGUGCCUUCUCAUCGUUAAUAUCAUCGAUGAGGGUCUGCUGCAGCUCACGCUUGGCCUCUUGGCUAGCCUGAGCCUUAUGCAACUUGAUGAUCUCAUUGAGUUCUUUG .................(((((((((..........)))))))))..(((....((.((.(((.((((....))))))).)).)).....)))((((((((....))))))))...... (-25.26 = -23.68 + -1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:41 2006