Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,117,479 – 10,117,580 |
Length | 101 |
Max. P | 0.664461 |
Location | 10,117,479 – 10,117,580 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -28.56 |
Consensus MFE | -18.25 |
Energy contribution | -20.01 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.04 |
Mean z-score | -1.75 |
Structure conservation index | 0.64 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10117479 101 - 27905053 ----------------UGGCUGUUGCCGGGUGUCUUUUGGCCAGGUCUUUCUUAAAUGCGGUUAAGCACUCCGGCUUCACAGCCACUUCCCCUCCACUUCACCACACUUCCC---AGGCC ----------------(((((((.(((((((((...((((((.................)))))))))).)))))...)))))))...........................---..... ( -29.63) >DroSec_CAF1 26950 99 - 1 ----------------UGGCUGUUGCCGGGUGUCUUUUGGCCAGGUCUUUCUUAAAUGCGGUUAAGCACUCCGGCUUCACAGCCACUUC--CUCCACUUCCCCCCACUUCCC---AGGCC ----------------(((((((.(((((((((...((((((.................)))))))))).)))))...)))))))....--.....................---..... ( -29.63) >DroSim_CAF1 23220 99 - 1 ----------------UGGCUGUUGCCGGGUGUCUUUUGGCCAGGUCUUUCUUAAAUGCGGUUAAGCACUCCGGCUUCACAGCCACUUC--CUCCACUUCCCCCCACUUCCC---AGGCC ----------------(((((((.(((((((((...((((((.................)))))))))).)))))...)))))))....--.....................---..... ( -29.63) >DroEre_CAF1 26760 87 - 1 ---------------UUGUCUGUUGCCGAGUGUCUUUUGGCCAGGUCUUUCCUAAAUGCGGUUAAGCACUCC---------UCCACUUC--CUCCACUUG-------CCCCCGGCGGGCC ---------------.........(((((((((...(((((((((.....)))......)))))))))))).---------........--.......((-------((...))))))). ( -20.30) >DroYak_CAF1 27279 118 - 1 UUUGCCUGUGGCCUGUUGCCUGUUGCCAAGUGUCUUUUGGCCAGGUCUUUCUUAAAUGCGGUUAAGCACUCCGGCUUCACAGCCACUUC--CUCCACUUCUCAUCUCUCCCCAGCGGGCC .........(((((((((((((..((((((.....))))))))))...........(((......)))....((((....)))).....--....................))))))))) ( -33.60) >consensus ________________UGGCUGUUGCCGGGUGUCUUUUGGCCAGGUCUUUCUUAAAUGCGGUUAAGCACUCCGGCUUCACAGCCACUUC__CUCCACUUCCCCCCACUUCCC___AGGCC ................(((((((.(((((((((...((((((.................))))))))))).))))...)))))))........................((.....)).. (-18.25 = -20.01 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:30 2006