Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,111,506 – 10,111,603 |
Length | 97 |
Max. P | 0.614482 |
Location | 10,111,506 – 10,111,603 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.37 |
Mean single sequence MFE | -20.23 |
Consensus MFE | -10.30 |
Energy contribution | -10.80 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.33 |
Mean z-score | -1.60 |
Structure conservation index | 0.51 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10111506 97 + 27905053 CAAAAUAGAA-------------CA--AAACUAA--AUCAAAAAUGCUACCAUCUGCUGCUAGUC------GCACUCAACGAGGUCCCACUGUAGACAUAAAUCGCAGCGUGGGCCAUAA ..........-------------..--.......--.((......((........))(((.....------)))......))((((((.((((.((......)))))).).))))).... ( -16.60) >DroSec_CAF1 20961 92 + 1 CAAAUUAAAA-------------AA-UAAACUAA--AUCAAAAAUGCUACCAUCUGCUGCUAGUC------GCACUCAACGAGGCCCCACUGUAGACAUAAAUCGCAG------CCAUAA ..........-------------..-........--...................(((((((((.------((.(((...)))))...))))..((......))))))------)..... ( -11.50) >DroSim_CAF1 17142 98 + 1 CAAAUUAAAA-------------AA-AAAACUAA--AUCAAAAAUGCUACCAUCUGCUGCUAGUC------GCACUCAACGAGACCCCACUGUAGACAUAAAUCGCAGCGUGGGCCAUAA ..........-------------..-........--.......(((...((((..(((((..(((------.(.......).))).........((......)))))))))))..))).. ( -14.20) >DroEre_CAF1 21049 95 + 1 AAAAACA----------------AAAAGAAGUAA--GUAAAAAAUGCUAC-AACUGGUGCUAGUC------GCACUCAACGAGGCCCCACUGUAGACAUAAAUCGCAGCGUGGGCCAUAA .......----------------...((..(((.--(((.....))))))-..))(((((.....------)))))......((((((.((((.((......)))))).).))))).... ( -24.00) >DroYak_CAF1 21135 96 + 1 CAAAAAAAAA-------------AAAAAAAGU----GUCUAAAAUUCUAC-GUCUGUUGCUAGUC------GCACUCAACGAGGCCCCACUGUAGACAUAAAUCGCAGCGUGGGCUAUAA ..........-------------.........----.............(-((.((.(((.....------)))..))))).((((((.((((.((......)))))).).))))).... ( -18.50) >DroAna_CAF1 24173 118 + 1 CAAAACAAUAGUAUUAGAAAGCAAUA-GGAGUAGCUGGCUGAC-AGCUAUCUUAUUUGACUAAUCUAUAUGCUACAUAGCGAGGCCUCACUGUAGAUGGCAAUCUCGGCGUGGGCCAUAA .......((((.(((((....(((((-(((.((((((.....)-)))))))))).))).))))))))).((((....)))).((((((.(((.((((....))))))).).))))).... ( -36.60) >consensus CAAAAUAAAA_____________AA_AAAACUAA__AUCAAAAAUGCUACCAUCUGCUGCUAGUC______GCACUCAACGAGGCCCCACUGUAGACAUAAAUCGCAGCGUGGGCCAUAA ..................................................................................((((((.((((.((......)))))).).))))).... (-10.30 = -10.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:24 2006