Locus 3721

Sequence ID 3R_DroMel_CAF1
Location 10,104,435 – 10,104,527
Length 92
Max. P 0.980216
window5963

overview

Window 3

Location 10,104,435 – 10,104,527
Length 92
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 97.02
Mean single sequence MFE -25.36
Consensus MFE -25.10
Energy contribution -25.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.99
SVM decision value 1.86
SVM RNA-class probability 0.980216
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10104435 92 - 27905053
----AGAGCGCGUGCUACGUGCCAAAGAAAACGGAAUGAGUUUAAGGAGCCACAACGCAGCAGUUGUUUUGCUUCAAUUUU-UUUUUGUUUUUUCGU
----.(.(((((.....))))))..(((((((((((.(((((...(((((.(((((......)))))...)))))))))).-.)))))))))))... ( -25.10)
>DroSec_CAF1 13826 92 - 1
----AGAGCGCGUGCUACGUGCCAAAGAAAACGGAAUGAGUUUAAGGAGCCACAACGCAGCAGUUGUUUUGCUUCAAUUUU-UUUUUGUUUUUUCGU
----.(.(((((.....))))))..(((((((((((.(((((...(((((.(((((......)))))...)))))))))).-.)))))))))))... ( -25.10)
>DroSim_CAF1 10020 91 - 1
----AGAGCGCGUGCUACGUGCCAAAGAAAACGGAAUGAGUUUAAGGAGCCACAACGCAGCAGUUGUUUUGCUUCAAUUUU--UUUUGUUUUUUCGU
----.(.(((((.....))))))..(((((((((((.(((((...(((((.(((((......)))))...)))))))))).--)))))))))))... ( -26.10)
>DroEre_CAF1 13855 93 - 1
----AGAGCGCGUGCUACGUGCCAAAGAAAACGGAAUGAGUUUAAGGAGCCACAACGCAGCAGUUGUUUUGCUUCAAUUUUUUUUUUGUUUUUUCGU
----.(.(((((.....))))))..(((((((((((.(((((...(((((.(((((......)))))...))))))))))...)))))))))))... ( -25.10)
>DroYak_CAF1 13913 96 - 1
AGAGAGAGCGCGUGCUACGUGCCAAAGAAAACGGAAUGAGUUUAAGGAGCCACAACGCGGCAGUUGUUUUGCUUCAAUUUU-UUUUUGUUUUUUCGU
.(((((((((((.....)))))((((((((((.......))))..(((((.(((((......)))))...)))))......-)))))).)))))).. ( -25.40)
>consensus
____AGAGCGCGUGCUACGUGCCAAAGAAAACGGAAUGAGUUUAAGGAGCCACAACGCAGCAGUUGUUUUGCUUCAAUUUU_UUUUUGUUUUUUCGU
.....(.(((((.....))))))..(((((((((((.(((((...(((((.(((((......)))))...))))))))))...)))))))))))... (-25.10 = -25.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:23 2006