Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,102,499 – 10,102,641 |
Length | 142 |
Max. P | 0.578435 |
Location | 10,102,499 – 10,102,601 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.73 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -29.61 |
Energy contribution | -30.25 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.21 |
Structure conservation index | 0.85 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10102499 102 - 27905053 AGCGUCGACUUCUGUAACUUCCUCUGGACGGUCGUCUGGCUCCUCUCCAGAUGGCAAUUCCGGAGCGUCUUCCGAUGGAGCAUCUUCCGGAAUAUCAUGCGG .((((.((.............(((((((..(((((((((.......)))))))))...)))))))....(((((..((.....))..)))))..)))))).. ( -35.10) >DroSec_CAF1 11832 102 - 1 AGCGUCGACUUCUGGAACAUCCUCAGGACGGUCGUCUGGCUCCUCUCCAGAAGGAAAUUCCGGAGCCUCUUCCGAUGGAGCAUCUUCCGGAAUAUCCUGCGG .((..((((((((((.......)))))..)))))(((((.......)))))((((.(((((((((.((((......))))....))))))))).)))))).. ( -35.80) >DroSim_CAF1 8030 102 - 1 AACGUCGACUUCUGGAACAUCCUCAGGACGGUCGUCUGGCUCCUCUCCAGAAGGAAAUUCCGGAGCAUCUUCCGAUGGGGCAUCUUCCGGAAUAUCCUGCGG ..(((((((((((((.......)))))..)))))(((((.......)))))((((.(((((((((.((((((....)))).)).))))))))).))))))). ( -34.60) >DroEre_CAF1 11912 102 - 1 AGCGUCGAUUUCUGGAACAUCCUCAGGACGAUCGUCUGGCUCCUCUCCAGAAGGUAAUUCCGGGGCAUCUUCCGAUGGAGCAUCUUCCGGAAUAUCUUGCGG .(((..(((((((((((........((((....)))).(((((.((((.(((.....))).)))).(((....))))))))...)))))))).))).))).. ( -32.40) >DroYak_CAF1 11923 102 - 1 AGCGUCGAAUUCUGGAUCAUCCUCAGGACGGUCGUCUGGCUCCUCUCCAGAAGGAAAUUCCGGAGCAUCUUCCGAUGGAGCAUCUUCCGGAAUAUCCUGCGG .((.......((((((.........((((....))))........))))))((((.(((((((((.((.((((...)))).)).))))))))).)))))).. ( -35.73) >consensus AGCGUCGACUUCUGGAACAUCCUCAGGACGGUCGUCUGGCUCCUCUCCAGAAGGAAAUUCCGGAGCAUCUUCCGAUGGAGCAUCUUCCGGAAUAUCCUGCGG ..(((.....((((((.........((((....))))........))))))((((.(((((((((.((.((((...)))).)).))))))))).))))))). (-29.61 = -30.25 + 0.64)
Location | 10,102,521 – 10,102,641 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -41.26 |
Consensus MFE | -36.44 |
Energy contribution | -37.08 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.08 |
Mean z-score | -1.18 |
Structure conservation index | 0.88 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10102521 120 + 27905053 CUCCAUCGGAAGACGCUCCGGAAUUGCCAUCUGGAGAGGAGCCAGACGACCGUCCAGAGGAAGUUACAGAAGUCGACGCUGAGAAAGUUCUGGAGGACUUGCUCAAGGCUUUUCCAGAAG .....(((((......)))))........((((((((..((((.(((....)))..(((.(((((.(((((.((........))...)))))...))))).)))..)))))))))))).. ( -40.60) >DroSec_CAF1 11854 120 + 1 CUCCAUCGGAAGAGGCUCCGGAAUUUCCUUCUGGAGAGGAGCCAGACGACCGUCCUGAGGAUGUUCCAGAAGUCGACGCUGAGAAAGUUCUGGAGGACUUGCUCAAGGCUUUUCCAGAAG .....(((((......)))))......((((((((((..((((...(((((((((...)))))........))))....((((.((((((....)))))).)))).)))))))))))))) ( -41.80) >DroSim_CAF1 8052 120 + 1 CCCCAUCGGAAGAUGCUCCGGAAUUUCCUUCUGGAGAGGAGCCAGACGACCGUCCUGAGGAUGUUCCAGAAGUCGACGUUGAGAAAGUUCUGGAGGACUUGCUCAAGGUUUUUCCAGAAG .((((((....))))....))......((((((((((((((((((((....)).))).....))))).......(((.(((((.((((((....)))))).))))).))))))))))))) ( -42.70) >DroEre_CAF1 11934 120 + 1 CUCCAUCGGAAGAUGCCCCGGAAUUACCUUCUGGAGAGGAGCCAGACGAUCGUCCUGAGGAUGUUCCAGAAAUCGACGCUGAGAAAGUUCUGGGGGACUUGCCCAAGGCUUUUCCAGAAG ...((((....))))............((((((((((..((((.......(((((...)))))..((((((.((........))...))))))(((.....)))..)))))))))))))) ( -41.00) >DroYak_CAF1 11945 120 + 1 CUCCAUCGGAAGAUGCUCCGGAAUUUCCUUCUGGAGAGGAGCCAGACGACCGUCCUGAGGAUGAUCCAGAAUUCGACGCUGAGAAAGUUCUGGGAGACUUGCUCGAGGCUUUUCCAGAAG ...((((....))))............((((((((((..((((.......(((((...)))))..(((((((((........))..)))))))(((.....)))..)))))))))))))) ( -40.20) >consensus CUCCAUCGGAAGAUGCUCCGGAAUUUCCUUCUGGAGAGGAGCCAGACGACCGUCCUGAGGAUGUUCCAGAAGUCGACGCUGAGAAAGUUCUGGAGGACUUGCUCAAGGCUUUUCCAGAAG .....(((((......)))))......((((((((((..((((...(((((((((...)))))........))))....((((.((((((....)))))).)))).)))))))))))))) (-36.44 = -37.08 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:22 2006