Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,422,404 – 1,422,533 |
Length | 129 |
Max. P | 0.955976 |
Location | 1,422,404 – 1,422,506 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -17.89 |
Energy contribution | -17.83 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.20 |
Mean z-score | -1.65 |
Structure conservation index | 0.75 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1422404 102 - 27905053 CGUAAUUGCAAGAGAAAUUUGGGUUUUUUGCUUGCCUCGUUGAUUUCCA-UUCACUGAACAACGUAGGCCAAUGAAAACCUGGACAAU----AUAAAUAUUCAAAUU .................((..(((((((.....(((((((((..(((..-......)))))))).))))....)))))))..))....----............... ( -21.90) >DroVir_CAF1 3951 105 - 1 CAAAAUUGCAAGAGC-AUUUGGGUUUUUUGCUUGCCUCGUUGUUUUUAAAACCAUAGAACAACGCAGGCCAAUGAAAACCUGGACAUUCGAUG-GAAUAUUUCCUGC .......(((.(((.-.((..(((((((.....(((((((((((((.........))))))))).))))....)))))))..))..)))...(-((.....)))))) ( -31.30) >DroGri_CAF1 4286 106 - 1 CAAAAUUGCAAAAGC-AAUUGGGUUUUUUGCUUGCCUCGUUGUUUUAUCAAUCAAUAAACAAUGCAGGCCAAUGAAAACCUGGACAAAGGAUAUAAAUAAUUGUAGC ...((((((....))-))))((((((((.....((((((((((((...........)))))))).))))....)))))))).......................... ( -25.30) >DroSec_CAF1 4299 102 - 1 CGUAAUUGCAAGAGAAAUUUGGGUUUUUUGCUUGCCUCGUUGCUUUCGA-UUCACUGAACAACGUAGGCCAAUGAAAACCUGGACAAU----AUAAGUAUUCAAAUU .................((..(((((((.....(((((((((..((((.-.....))))))))).))))....)))))))..))....----............... ( -23.20) >DroEre_CAF1 4490 99 - 1 CGUAAUUGCAAGAGAAAUUUGUGUUUUUUGCUUGCCACGUUGCUUUCAA-UUUACUGAACAGCGUAGGCCAAUGAAAACCUGGACAAC----AUA-GUAUAUAAA-- .((....((((((((........))))))))..(((((((((..((((.-.....)))))))))).)))..............))...----...-.........-- ( -19.10) >DroYak_CAF1 4901 101 - 1 CGUAAUUGCAAGAGAAAUUUGGGUUUUUUGCUUGCCUCGUUGCUUUCGA-UUCACUGAACAACGUAGGCCAAUGAAAACCUGAACAAU----AUA-GUAUUAAAACG .................((..(((((((.....(((((((((..((((.-.....))))))))).))))....)))))))..))....----...-........... ( -22.80) >consensus CGUAAUUGCAAGAGAAAUUUGGGUUUUUUGCUUGCCUCGUUGCUUUCAA_UUCACUGAACAACGUAGGCCAAUGAAAACCUGGACAAU____AUAAAUAUUUAAAGC .................((..(((((((.....(((((((((.((...........)).))))).))))....)))))))..))....................... (-17.89 = -17.83 + -0.05)
Location | 1,422,436 – 1,422,533 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 75.78 |
Mean single sequence MFE | -22.51 |
Consensus MFE | -13.92 |
Energy contribution | -14.36 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.12 |
Mean z-score | -1.61 |
Structure conservation index | 0.62 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1422436 97 + 27905053 UGGCCUACGUUGUUCAGU----G-AA-UGGAAAUCAACGAGGCAAGCAAAAAACCCAAAUUUCUCUUGCAAUUACGUACCAGAAUCA---AGCUAUU-U--AAGACAAG ..((((.(((((((((..----.-..-))))...))))))))).................((((..(((......)))..))))...---.......-.--........ ( -16.20) >DroVir_CAF1 3986 99 + 1 UGGCCUGCGUUGUUCUAU----G-GUUUUAAAAACAACGAGGCAAGCAAAAAACCCAAAU-GCUCUUGCAAUUUUGUACAAUGAAAA---UGCCACA-CAAAAGGCAAA ..((((.(((((((....----.-........)))))))))))............(((((-((....)))..))))...........---((((...-.....)))).. ( -21.42) >DroPse_CAF1 5144 99 + 1 UGGCCUACGUUGCUCUGGUU-UU-CU-UUUUGAGCAACAAGGCAAGCAAAAAACCCAAAU-GCUCUUGCAAUUUUGUACAAUGAAAG---UGCCAUC-C--AGGACAAG ((.(((..(((((((.((..-..-))-....)))))))..((((...........(((((-((....)))..))))...........---))))...-.--))).)).. ( -23.55) >DroGri_CAF1 4322 98 + 1 UGGCCUGCAUUGUUUAUU----G-AUUGAUAAAACAACGAGGCAAGCAAAAAACCCAAUU-GCUUUUGCAAUUUUGUACAAUGUAAGAAGUGCCAC-----AUGGCAAA ..((((.(.(((((((((----.-...))).)))))).)))))..(((....((..((((-((....))))))..))....)))......((((..-----..)))).. ( -21.80) >DroMoj_CAF1 5650 101 + 1 UGGCCUUCAUUGUUUAUU----GUAUUUUCAAAACAACGAGGCAAGCAAAAAACCCAAAU-GCUAUUGCAAUUUUGUACAAUGAAAG---AGCCACGUCAAAAGGCAAA (((((((((((((...((----(......))).((((....(((((((...........)-)))..)))....)))))))))).)))---.)))).(((....)))... ( -21.90) >DroPer_CAF1 4811 100 + 1 UGGCCUACGUUGCUCUGGUUUUU-CU-UUUGGAGCAACGAGGCAAGCAAAAAACCCAAAU-GCUCUUGCAAUUUUGUACAAUGAAAG---UGCCAUC-C--AGGACAAG ..((((.((((((((..(.....-..-.)..))))))))))))...........((...(-((....))).....((((.......)---)))....-.--.))..... ( -30.20) >consensus UGGCCUACGUUGUUCAGU____G_AU_UUUAAAACAACGAGGCAAGCAAAAAACCCAAAU_GCUCUUGCAAUUUUGUACAAUGAAAG___UGCCACC_C__AAGACAAA ..((((.((((((((................))))))))))))..((((................))))........................................ (-13.92 = -14.36 + 0.45)
Location | 1,422,436 – 1,422,533 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 75.78 |
Mean single sequence MFE | -24.46 |
Consensus MFE | -19.62 |
Energy contribution | -18.62 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.32 |
Mean z-score | -1.55 |
Structure conservation index | 0.80 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1422436 97 - 27905053 CUUGUCUU--A-AAUAGCU---UGAUUCUGGUACGUAAUUGCAAGAGAAAUUUGGGUUUUUUGCUUGCCUCGUUGAUUUCCA-UU-C----ACUGAACAACGUAGGCCA .......(--(-((.((((---..(((((.(((......))).))))....)..)))).))))...(((((((((..(((..-..-.----...)))))))).)))).. ( -18.30) >DroVir_CAF1 3986 99 - 1 UUUGCCUUUUG-UGUGGCA---UUUUCAUUGUACAAAAUUGCAAGAGC-AUUUGGGUUUUUUGCUUGCCUCGUUGUUUUUAAAAC-C----AUAGAACAACGCAGGCCA .((((.(((((-((..(..---......)..)))))))..))))((((-(...........)))))(((((((((((((......-.----..))))))))).)))).. ( -28.00) >DroPse_CAF1 5144 99 - 1 CUUGUCCU--G-GAUGGCA---CUUUCAUUGUACAAAAUUGCAAGAGC-AUUUGGGUUUUUUGCUUGCCUUGUUGCUCAAAA-AG-AA-AACCAGAGCAACGUAGGCCA .....((.--.-((((...---..(((.(((((......)))))))))-)))..))..........((((((((((((....-..-..-.....)))))))).)))).. ( -26.42) >DroGri_CAF1 4322 98 - 1 UUUGCCAU-----GUGGCACUUCUUACAUUGUACAAAAUUGCAAAAGC-AAUUGGGUUUUUUGCUUGCCUCGUUGUUUUAUCAAU-C----AAUAAACAAUGCAGGCCA ..((((..-----..)))).......((....((..((((((....))-))))..))....))...((((((((((((.......-.----...)))))))).)))).. ( -24.60) >DroMoj_CAF1 5650 101 - 1 UUUGCCUUUUGACGUGGCU---CUUUCAUUGUACAAAAUUGCAAUAGC-AUUUGGGUUUUUUGCUUGCCUCGUUGUUUUGAAAAUAC----AAUAAACAAUGAAGGCCA ...((((((.((((.(((.---.....((((((......))))))(((-(...........)))).))).))))((((.........----...))))...)))))).. ( -21.50) >DroPer_CAF1 4811 100 - 1 CUUGUCCU--G-GAUGGCA---CUUUCAUUGUACAAAAUUGCAAGAGC-AUUUGGGUUUUUUGCUUGCCUCGUUGCUCCAAA-AG-AAAAACCAGAGCAACGUAGGCCA .....((.--.-((((...---..(((.(((((......)))))))))-)))..))..........((((((((((((....-..-........)))))))).)))).. ( -27.94) >consensus CUUGCCUU__G_GAUGGCA___CUUUCAUUGUACAAAAUUGCAAGAGC_AUUUGGGUUUUUUGCUUGCCUCGUUGUUUUAAA_AU_C____ACAGAACAACGUAGGCCA ...(((.........)))......................(((((((..........)))))))..((((((((((((................)))))))).)))).. (-19.62 = -18.62 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:40 2006