Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,094,373 – 10,094,481 |
Length | 108 |
Max. P | 0.702429 |
Location | 10,094,373 – 10,094,481 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.75 |
Mean single sequence MFE | -39.22 |
Consensus MFE | -14.81 |
Energy contribution | -15.84 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.41 |
Mean z-score | -2.01 |
Structure conservation index | 0.38 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10094373 108 - 27905053 ---------UUAUGGGGCAGAAUCUCCUCCAGCCGCAGUUGUUGUUCCAGAGCAGCACCCAGACUCAGGCUCCGCAGAUAAUCUUGCCUCAG---GCUCAGCCCCAGAACAUCAUUUCGU ---------...((((((.((..((.....((((..((((((((((....))))))).....)))..))))..((((......))))...))---..)).)))))).............. ( -29.80) >DroVir_CAF1 7870 117 - 1 CCACGCAGCUGUUGGGCCAAAAUCUGCUGCAGCCGCAGCUACUCUUCCAGAGCAAUGCGCAGCCGCAGACGCAGCAGCUGUUGUUGCCGCAG---ACGCAGGCACAGAACAUCAUCUCGU ....((((((((((.(......(((((.((.((.(((....(((.....)))...))))).)).)))))).))))))))))(((.(((((..---..)).)))))).............. ( -41.60) >DroWil_CAF1 8735 109 - 1 --------UUGCUGGGGCAGAGUUUGCUGCAACCGCAGCUACUCUUCCAGAGUAAUGCACAGGCGCAGGCGCCGCAGUUGAUCCUCCCCCAG---ACGCAACCGCAGAAUAUCAUUUCAU --------...((((((.((..((.(((((....(((..(((((.....))))).)))...((((....))))))))).))..)).))))))---..((....)).(((......))).. ( -43.60) >DroMoj_CAF1 6857 117 - 1 CCACCCAGCUGCUUGGUCAGAAUUUGCUGCAGCCCCAGCUGCUGUUUCAGAGCAACUCGCAGCCGCAAACGUCGCAGCUGCUGCUGCCGCAA---ACCCAGGCGCAGAACAUCAUUUCGU .......((.((((((......(((((.(((((..((((((((((((..(((...)))((....)))))))..)))))))..))))).))))---).))))))))............... ( -41.30) >DroAna_CAF1 8424 108 - 1 ---------UGAUGGGUCAAAAUCUGCUGCAGCCGCAGUUGCUCUUCCAGAGCAGCGCGCAGGCGCAGACUCCUCAACUAAUUCUCCCCCAG---ACACAGCCGCAGAAUAUCAUCUCAU ---------.(((((.......(((((.((.(((((.(((((((.....)))))))..)).)))..................(((.....))---)....)).)))))...))))).... ( -32.20) >DroPer_CAF1 3995 117 - 1 ---GACAGCUGCUGGGGCAGGGCAUGCUGCAGCCGCAGCUCCUCUUCCAGAGCAAUGCCCAGCAGCAGCAUCCGCAGCUGAUCCUGCCGCAGCACACCCAGCCGCAGAACAUCAUCUCGU ---....((.((((((((.(((((((((((....)))))..(((.....)))..)))))).((.((((.(((.......))).)))).)).))...)))))).))............... ( -46.80) >consensus ________CUGCUGGGGCAGAAUCUGCUGCAGCCGCAGCUGCUCUUCCAGAGCAACGCGCAGCCGCAGACGCCGCAGCUGAUCCUGCCGCAG___ACCCAGCCGCAGAACAUCAUCUCGU ...........(((.(((.......(((((....)))))(((((.....))))).......((.((((...............)))).))..........))).)))............. (-14.81 = -15.84 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:14 2006