Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,090,863 – 10,090,972 |
Length | 109 |
Max. P | 0.500000 |
Location | 10,090,863 – 10,090,972 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.70 |
Mean single sequence MFE | -27.82 |
Consensus MFE | -19.18 |
Energy contribution | -18.93 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.21 |
Mean z-score | -1.11 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10090863 109 + 27905053 AAUAGGACACUU----CACUUUGUACUCACCUCACAGCAGUGAUUAAUGAAACGCGCCGCAUUGCCGCGCAUCGUGGCAUCAACUACAAGGUUAUCGUCAAUUUUGAACAUAU .....(((....----.((((((((.(((..((((....))))....))).....(((((..(((...)))..)))))......))))))))....))).............. ( -23.80) >DroVir_CAF1 4076 106 + 1 AU------AUCCCAGUCUC-UUUAACUUACCUCACAGGAGUGAUUGAUAAAGCGCGCCGCAUUGCCACGCAUUGUGGCAUCCACUACCAGAUUGUCGUCGAUCUUGAACAUGU ..------....(((((.(-(((.............)))).))))).........((((((.(((...))).))))))........(.((((((....)))))).)....... ( -23.82) >DroPse_CAF1 221 107 + 1 AAUC-AAUGCUU----GAA-AAGUACUCACCUCACAGGAGUGAUUGAUGAAACGGGCCGCAUUGCCCCGCAUGGUGGCAUCCACCACCAGGUUGUCAUCGAUCUUGAACAUGU ..((-((.....----...-....((((.(......)))))((((((((((((((((......))))....((((((......)))))).))).)))))))))))))...... ( -32.30) >DroGri_CAF1 225 106 + 1 AA------ACUUAAAUGUC-GUUUACUCACCUCACAGGAGUGAUUGAUAAAACGAGCCGCAUUGCCACGCAUCGUGGCAUCCACCACGAGAUUGUCGUCGAUCUUGAACAUGU ..------.........((-((((..(((..((((....)))).)))..))))))(((((..(((...)))..)))))........((((((((....))))))))....... ( -29.10) >DroAna_CAF1 4959 98 + 1 -A--------------AAAUAAGUACUCACCUCACAGGAGUGAUUGAUGAAACGGGCCGCAUUGCCGCGCAUGGUGGCAUCCACAACCAGGUUGUCGUCAAUCUUGAACAUGU -.--------------........((((.(......)))))((((((((((((.((......((((((.....)))))).......))..))).))))))))).......... ( -25.62) >DroPer_CAF1 221 107 + 1 AAUC-AAUGCUU----GAA-AAGUACUCACCUCACAGGAGUGAUUGAUGAAACGGGCCGCAUUGCCCCGCAUGGUGGCAUCCACCACCAGGUUGUCAUCGAUCUUGAACAUGU ..((-((.....----...-....((((.(......)))))((((((((((((((((......))))....((((((......)))))).))).)))))))))))))...... ( -32.30) >consensus AA______ACUU____GAA_AAGUACUCACCUCACAGGAGUGAUUGAUGAAACGGGCCGCAUUGCCACGCAUGGUGGCAUCCACCACCAGGUUGUCGUCGAUCUUGAACAUGU ........................((((.........))))(((((((((.....(((((..(((...)))..)))))(((........)))..))))))))).......... (-19.18 = -18.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:13 2006