Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,088,827 – 10,088,947 |
Length | 120 |
Max. P | 0.792460 |
Location | 10,088,827 – 10,088,947 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -46.37 |
Consensus MFE | -25.42 |
Energy contribution | -26.27 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.59 |
Mean z-score | -1.75 |
Structure conservation index | 0.55 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10088827 120 - 27905053 CUGUUUGGCCUCUUGCGCUGCUUUGGCGGCACUUAGUGCCGCCUUCUUGGUCUUAUCGUAAUCUAAUCGAGCUUCGCUAAGUUGCCGCAUUAGGACAUUAACCCGCCGCUGGGCAGCCUC .......((.....))(((((.(..(((((...((((((.((...((((((....(((.........))).....))))))..)).))))))((........)))))))..))))))... ( -41.20) >DroGri_CAF1 179492 120 - 1 UUGCUUGGCUUCGUUGGCCGCACACAUUGCUCUGUAGGCAGCCUUUUUGGUCUUGGCGUAGUCGUUACGUGCUUCGCUCAGUUGCCGCAGGAGCACACCGACGCGCUUCUGGGCUGCUUC .(((..((((.....))))(((.....)))...)))((((((((....((....(((((.((((....(((((((((.........)).)))))))..))))))))).)))))))))).. ( -42.80) >DroSec_CAF1 147559 120 - 1 CUGUUUGGCGUCUUGGGCCGCUUUGGCGGCACUUUGUGCCGCCUUCUUGGUCUUAUCGUAGUCCAAUCGAGCUUCGCAGAGUUGCCGCAUUAGCACAUUAACACGCCGCUGGGCAGCCUC (((((((((((.((((...(((...(((((((((((((..((....((((.((......)).))))....))..))))))).))))))...)))...)))).))))))...))))).... ( -46.50) >DroEre_CAF1 159865 120 - 1 CUGUUUGGCUUCCUGGGCUGCUUUGGCUGCAUUGAGUGCCGCCUUCUUGGUCUUCUCGAAGUCCAUUCGAGCUUCGCUGAGCUGGCGCAUCAGCUCAGUAACCCGCCGCUGAGCAGCCUC ..............(((((((.(..((.((...(((....(((.....)))...)))((((..(....)..))))((((((((((....)))))))))).....)).))..)))))))). ( -47.70) >DroYak_CAF1 154806 120 - 1 CUGCUUGGCUUCUUGGGCGGCUCUGGCUGCACUGAGUGCCGCCUUCUUGGUCUUCUCGAAGUCUAUUCGAGCCUCGCUAAGUUGGCGCAUCAGCUCAGUAACCCGCCGCUGAGCAGCCUC (((((..((....((((((((....)))))(((((((..((((..((((((...((((((.....))))))....))))))..)))).....)))))))...)))..))..))))).... ( -53.20) >DroPer_CAF1 150860 120 - 1 CUGCUUGGCCUCCUUGGCGGCACAGAUGGCCUUAUAGGCCUCCUUCUUGGUCUUCCCAUAGUCGGCGCGGGCAUCCCUCAGCUGGCGGAGCAGGACACCCACCCGGUUGUGGGCGGCGUC (((..(.(((.....))).)..)))...(((....(((((........))))).((((((..(((.(.(((..((((((.(....).)))..)))..))).))))..)))))).)))... ( -46.80) >consensus CUGCUUGGCUUCUUGGGCCGCUCUGGCGGCACUGAGUGCCGCCUUCUUGGUCUUCUCGUAGUCCAUUCGAGCUUCGCUAAGUUGCCGCAUCAGCACACUAACCCGCCGCUGGGCAGCCUC (((((..((......(((.((((.((((((((...))))))))....(((.((......)).)))...))))...(((((((....)).)))))..........)))))..))))).... (-25.42 = -26.27 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:10 2006