| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,087,710 – 10,087,825 |
| Length | 115 |
| Max. P | 0.614430 |
| Location | 10,087,710 – 10,087,825 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.04 |
| Mean single sequence MFE | -47.67 |
| Consensus MFE | -30.21 |
| Energy contribution | -31.85 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10087710 115 + 27905053 AGAUCCUGUUUCACUUGGAGUGAGGCUGCCUCUCCGGCGGCCAUCUGGGCGUCAUUGGCCGCCUUGGCGUCCUGGGCGGCCUUAAUUGCAAUGCUGGAAGCCUUGCUCUUGGCAU .............((.((((..(((((.....(((((((.((....))(((.....((((((((.((...)).)))))))).....)))..))))))))))))..)))).))... ( -51.10) >DroPse_CAF1 148365 115 + 1 AGCUCGGACUUGAUCUUUAAGGAGGCCGCCUCUGCGGCAGAGCCCUGUGCCUCGUUGGCCGCCUUUGCCUCCUGUGCCGCCUUCUGGGCAAUGUUGGAUGCCUUGGACUUGGGAU ........((..(..(((((((((((.(((..((.((((.(....).)))).))..))).))))).((.(((..((((........)))).....))).)))))))).)..)).. ( -38.70) >DroSim_CAF1 148345 115 + 1 AGAUCCUGUUUCACUUGGAGUGAGGCUGCCUCUCCGGCGGCCAGCUGGGCGUCAUUGGCCGCCUUGGCGUCCUGUGCGGCCUUAAGUGCAAUGCUGGAAGCCUUGCUCUUGGCAU .............((.((((..((((((((.....)))..(((((...(((.....((((((...((...))...)))))).....)))...))))).)))))..)))).))... ( -49.20) >DroEre_CAF1 158759 115 + 1 AGUUCCACUUUCACUUUGAGAGAGGCUGCCUCUCCGGCGGCCAUCUGGGCGUCAUUGGCCGCCUUGGCGUCCAGGGCGGCCUUAACAGCAAUGCUGGAAGCCUUGCUCUUGGCGU ....((((((((.....))))).(((((((.....)))))))...)))((((((..(((((((((((...))))))))))).....(((((.((.....)).)))))..)))))) ( -57.20) >DroYak_CAF1 153694 115 + 1 AGUUCCAGCUUCACUUUGAGCGAGGCUGCCUCUCCGGCGGCCACCUGAGCGUCAUUGGCCGCCUUUGCGUCCUGGGCGGCCUUCAUUGCAAUGCUGGAAGCCUUGCUCUUGGCAU ..(((((((.......(.((.(.(((((((.....))))))).))).)(((.....((((((((.........)))))))).....)))...)))))))(((........))).. ( -51.60) >DroPer_CAF1 149564 115 + 1 AGCUCGGACUUGAUCUUUAAGGAGGCCGCCUCUGCGGCAGAGCCCUGUGCCUCGUUGGCCGCCUUUGCCUCUUGUGCCGCCUUCUGGGCAAUGUUGGAUGCCUUGGACUUGGGAU ........((..((((...(((((((.(((...(.(((((((...((.(((.....))))).))))))).)..).)).)))))))(((((........))))).))).)..)).. ( -38.20) >consensus AGAUCCAGCUUCACUUUGAGGGAGGCUGCCUCUCCGGCGGCCACCUGGGCGUCAUUGGCCGCCUUGGCGUCCUGGGCGGCCUUAAGUGCAAUGCUGGAAGCCUUGCUCUUGGCAU ...((((((..............(((((((.....)))))))......(((.....((((((.............)))))).....)))...)))))).(((........))).. (-30.21 = -31.85 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:09 2006