Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,086,493 – 10,086,613 |
Length | 120 |
Max. P | 0.669261 |
Location | 10,086,493 – 10,086,613 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.50 |
Mean single sequence MFE | -58.13 |
Consensus MFE | -30.44 |
Energy contribution | -32.83 |
Covariance contribution | 2.39 |
Combinations/Pair | 1.26 |
Mean z-score | -2.09 |
Structure conservation index | 0.52 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10086493 120 + 27905053 CGGCCAGUGCCGCCUCCGCCGCACGAGCGGAUUGAGCUGCCUUGGCGGCCAGUUCGUUUUUGACCUGGGAUGCAGCCGCCUCGGCAGCUGCCAUCUGCGAAUCGCUGGCUGCCUUGGCCU .((((((.((.(((..((.(((..((((((((((.(((((....)))))))))))))))........(((((((((.((....)).)))).))))))))...))..))).)).)))))). ( -61.60) >DroVir_CAF1 198117 120 + 1 CCGCGAGCGCUGCCUCUGCGGCGCGAGCGGAUUGAGCCGCCCUCUCGGCCAGCUCCUGCUUGACCUGCGUGGCAGCUGCCUCUGCGGCGGCCAUUUGUGCAUCACUGGCAGCCCUCGCCU ..(((((.((((((...((((.((((((((((((.((((......))))))).))).))))).)))))(((((.(((((....))))).)))))............)))))).))))).. ( -61.20) >DroPse_CAF1 147103 120 + 1 CCGCGAGUGCUGCUUCUGCUGCACGCGCCGACUGCGCCGCUUUCUCGGCCAGCUCUGUCUUCACCUGGGUGGCUGCUGCCUCGGCUGCCGACAUUUGGGCAUCGCUAGCCGCCUUGGCAU ..(((.((((.((....)).)))).))).(((((.((((......))))))).))........((.((((((((((.((....))((((........))))..)).)))))))).))... ( -51.00) >DroGri_CAF1 175592 120 + 1 CCGCCAGCGCCGCCUCUGCUGCACGAGCCGACUGCGCCGCCCUCUCGGCCAGCUCUGCUUUAACCUGAGAUGCGGCGGCUUCGGCGGCGGCCAUUUGUGCAUCGCUGGCGGCCCUCGCCU ..((.((.((((((..((.(((((((((((.(((((((((((((((((..(((...))).....)))))).).))))))....))))))))...))))))).))..)))))).)).)).. ( -60.40) >DroMoj_CAF1 176988 120 + 1 CGGCCAGCGCUGCCUCGGCGGCACGUGCCGACUGCGCCGCCCGCUCGGCCAACUGCUGCUUGACCUGUGUGGCAGCUGCCUCUGCGGCGGCCAUUUGCGCAUCGCUGGCGGCCCUCGCCU ..(((((((((((....)))))..(((((((.((.((((((.((..(((...((((..(.........)..))))..)))...)))))))))).))).)))).))))))(((....))). ( -63.60) >DroPer_CAF1 148304 120 + 1 CCGCGAGUGCUGCUUCUGCUGCACGCGCCGACUGCGCCGCUUUCUCGGCCAGCUCUGUCUUCACCUGGGUGGCUGCUGCCUCGGCUGCCGACAUUUGGGCAUCGCUAGCCGCCUUGGCAU ..(((.((((.((....)).)))).))).(((((.((((......))))))).))........((.((((((((((.((....))((((........))))..)).)))))))).))... ( -51.00) >consensus CCGCCAGCGCUGCCUCUGCUGCACGAGCCGACUGCGCCGCCCUCUCGGCCAGCUCUGUCUUGACCUGGGUGGCAGCUGCCUCGGCGGCGGCCAUUUGCGCAUCGCUGGCCGCCCUCGCCU ..((..((((.((....)).))))..((((((((.((((......))))))).))...........(((((((.((.((....)).)).))))))).)))...)).((((.....)))). (-30.44 = -32.83 + 2.39)
Location | 10,086,493 – 10,086,613 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.50 |
Mean single sequence MFE | -57.97 |
Consensus MFE | -32.82 |
Energy contribution | -32.35 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.35 |
Mean z-score | -1.79 |
Structure conservation index | 0.57 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10086493 120 - 27905053 AGGCCAAGGCAGCCAGCGAUUCGCAGAUGGCAGCUGCCGAGGCGGCUGCAUCCCAGGUCAAAAACGAACUGGCCGCCAAGGCAGCUCAAUCCGCUCGUGCGGCGGAGGCGGCACUGGCCG .(((((..((.(((.((.(((....))).))(((((((..((((((.......(((.((......)).)))))))))..)))))))...((((((.....))))))))).))..))))). ( -60.51) >DroVir_CAF1 198117 120 - 1 AGGCGAGGGCUGCCAGUGAUGCACAAAUGGCCGCCGCAGAGGCAGCUGCCACGCAGGUCAAGCAGGAGCUGGCCGAGAGGGCGGCUCAAUCCGCUCGCGCCGCAGAGGCAGCGCUCGCGG ..(((((.((((((.(((.(((.....((((((((.....))).((......)).)))))(((..((((((.((....)).)))))).....))).))).)))...)))))).))))).. ( -62.40) >DroPse_CAF1 147103 120 - 1 AUGCCAAGGCGGCUAGCGAUGCCCAAAUGUCGGCAGCCGAGGCAGCAGCCACCCAGGUGAAGACAGAGCUGGCCGAGAAAGCGGCGCAGUCGGCGCGUGCAGCAGAAGCAGCACUCGCGG ..(((..((.((((.((..((((........))))((....)).)))))).))..))).......((.(((((((......)))).))))).(((.((((.((....)).)))).))).. ( -48.60) >DroGri_CAF1 175592 120 - 1 AGGCGAGGGCCGCCAGCGAUGCACAAAUGGCCGCCGCCGAAGCCGCCGCAUCUCAGGUUAAAGCAGAGCUGGCCGAGAGGGCGGCGCAGUCGGCUCGUGCAGCAGAGGCGGCGCUGGCGG .(((....)))((((((....((....))(((((((((((...((((((.((((.(((...(((...))).)))))))..))))))...)))))((........)))))))))))))).. ( -63.80) >DroMoj_CAF1 176988 120 - 1 AGGCGAGGGCCGCCAGCGAUGCGCAAAUGGCCGCCGCAGAGGCAGCUGCCACACAGGUCAAGCAGCAGUUGGCCGAGCGGGCGGCGCAGUCGGCACGUGCCGCCGAGGCAGCGCUGGCCG .(((....)))(((((((.(((((...((((((((.....))).(((((.((....))...)))))....))))).)).((((((((.((....))))))))))...))).))))))).. ( -63.90) >DroPer_CAF1 148304 120 - 1 AUGCCAAGGCGGCUAGCGAUGCCCAAAUGUCGGCAGCCGAGGCAGCAGCCACCCAGGUGAAGACAGAGCUGGCCGAGAAAGCGGCGCAGUCGGCGCGUGCAGCAGAAGCAGCACUCGCGG ..(((..((.((((.((..((((........))))((....)).)))))).))..))).......((.(((((((......)))).))))).(((.((((.((....)).)))).))).. ( -48.60) >consensus AGGCCAAGGCCGCCAGCGAUGCACAAAUGGCCGCCGCCGAGGCAGCUGCCACCCAGGUCAAGAAAGAGCUGGCCGAGAAGGCGGCGCAGUCGGCUCGUGCAGCAGAGGCAGCACUCGCGG .((((.((....)).((.((......)).))))))((....)).(((((......(((((.........)))))......))))).......(((.((((.((....)).)))).))).. (-32.82 = -32.35 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:06 2006