Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,086,213 – 10,086,333 |
Length | 120 |
Max. P | 0.874929 |
Location | 10,086,213 – 10,086,333 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -43.52 |
Consensus MFE | -26.62 |
Energy contribution | -27.43 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.40 |
Mean z-score | -2.33 |
Structure conservation index | 0.61 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10086213 120 + 27905053 GUUAGAUUCUCCACCCGGUGCUUGGCAGCCUCCAGGAGCUGCGUCUUCUCGGCCAGCUCCUGCUGCGCUCCACUGGCCACGUUCUCGAUAUUGGCCAGAUUGGACGUGGCGGCUAUCACA .................(((..((((.(((..(((((((((.(((.....))))))))))))..(((.(((((((((((((....))....)))))))..)))))))))).)))).))). ( -51.60) >DroVir_CAF1 197837 120 + 1 UAUAGACUCUCUACGCGAUUCUUGGCCGCUUCCAGGAGCUGGGUUUUCUCGGCCAGCUCCUGCUGUGCACCAUUUGCCACGCUCUCAAUGUUGACCAGAUUCGCCGUGAAAGCGGCCACC ...(((.((.......)).)))(((((((((.((((((((((.(......).))))))))))(((..((.((((.((...))....)))).))..)))...........))))))))).. ( -41.30) >DroGri_CAF1 175312 120 + 1 UUUAAUCCCUCUACGCGAUUCUUCGCCGCUUCCAGCAGCUGACUCUUCUCCGCCAGCUCCUGUUGUGCACCCGAUGCGACGUUCUCAAUAUUACCCAGAUUCGAGGUCGCUGCGCUCACC ..............((((....))))......(((.(((((.(........).))))).)))..(((((......(((((...(((...(((.....)))..)))))))))))))..... ( -26.30) >DroEre_CAF1 157233 120 + 1 CUAAGAUUCUCCACACGAUGCUUGGCCGCCUCCAGGAGCUGUGUCUUCUCGGCCAGCUCCUGCUGCGCACCACUUGCUACGUUCUCGAUAUUGGCCAGAUUGGACGUGGCGGCCAUCACC ......................((((((((..(((((((((.(((.....))))))))))))..).)).......(((((((((.................))))))))))))))..... ( -46.03) >DroYak_CAF1 152232 120 + 1 CUGAGAUUCUCCACCCUAUGCUUGGCCGCCUCCAGGAGCUGUGUCUUCUCGGCCAGCUCCUGCUGUGCGCCACUUGCCACGUUCUCGAUAUUGGCCAGAUUGGCCGUGGCGGCCAUCACC ......................((((((((..(((((((((.(((.....))))))))))))..).))(((((......((....)).....((((.....))))))))))))))..... ( -51.00) >DroMoj_CAF1 176708 120 + 1 UUGAGGCCCUCCACGCGAUUCUUGGCCGCCUCCAGGAGUUGUGUUUUCUCAGCCAGCUCCUGCUGCGCACCGUUUGCCACAUUCUCAAUAUUGGCCAGAUUUGCCGUGAAGGCGGCUACC ...((.((((.(((((((.(((.((((((...(((((((((.(((.....))))))))))))..))(((.....)))...............))))))).))).)))).))).).))... ( -44.90) >consensus UUUAGACUCUCCACGCGAUGCUUGGCCGCCUCCAGGAGCUGUGUCUUCUCGGCCAGCUCCUGCUGCGCACCACUUGCCACGUUCUCAAUAUUGGCCAGAUUGGACGUGGCGGCGAUCACC ....(((((.((((.(((...((((((((...(((((((((.(((.....))))))))))))..))(((.....)))...............))))))..)))..)))).))..)))... (-26.62 = -27.43 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:03 2006