Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,422,256 – 1,422,374 |
Length | 118 |
Max. P | 0.882369 |
Location | 1,422,256 – 1,422,374 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.54 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -24.65 |
Energy contribution | -24.52 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.02 |
Structure conservation index | 0.88 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1422256 118 + 27905053 AGUUUUCAUUGGCCUUUGAUGCUCGGAUUUUGUGAGGCAACAAGGCAAGCAAA-AACUCAAAUGCUCUUGCAAUUUUGUACAAUGAAAAUGUCAUCCAGGACAAGACCAUUCUCAAAAA- .(((((((((((((((.(.((((((.......))).))).))))))..(((((-(...(((......)))...)))))).))))))))))(((......))).................- ( -26.50) >DroSec_CAF1 4151 118 + 1 AGUUUUCAUUGGCCUUUGAUGCUCGGGUUUUGUGAGGCAACAAGGCAAGCAAA-AACUCAAAUGCUCUUGCAAUUUUGUACAAUGAAAAUGUCAUCCAGGACAAGACCAUUCUCAAAAA- .((((((((((((.(((((((((...(((((((......))))))).))))..-...))))).))...((((....))))))))))))))(((......))).................- ( -28.10) >DroEre_CAF1 4351 119 + 1 AGUUUUCAUUGGCCUUUGAUGCUCGGACUUUGUGAAGCAACAAGGCAAGCAAAAAACUAAUAUGCUCUUGCAAUUUUGUACAAUGAAAAUGUCAUCCAGGACAAGACCAUUCUCAAAAA- .(((((((((((((((.(.((((((.......)).)))).))))))..((((((........(((....))).)))))).))))))))))(((......))).................- ( -26.20) >DroYak_CAF1 4745 119 + 1 AGUUUUCAUUGGCCAUUGGUGCUCAGACUUUGUGAAGCACCAAGGCAAGCAAA-AACUCAUAUGCUCUUGCAAUUUUGUACAAUGAAAAUCUCAUCCAGGACAAGACCAUUCUCAAAAAU .(((((((((((((.((((((((((.......)).)))))))))))..(((((-(.......(((....))).)))))).))))))))))........((......))............ ( -31.50) >consensus AGUUUUCAUUGGCCUUUGAUGCUCGGACUUUGUGAAGCAACAAGGCAAGCAAA_AACUCAAAUGCUCUUGCAAUUUUGUACAAUGAAAAUGUCAUCCAGGACAAGACCAUUCUCAAAAA_ .(((((((((((((.(((.((((((.(...).))).))).))))))................(((....)))........))))))))))(((......))).................. (-24.65 = -24.52 + -0.12)
Location | 1,422,256 – 1,422,374 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.54 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -24.02 |
Energy contribution | -24.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.78 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1422256 118 - 27905053 -UUUUUGAGAAUGGUCUUGUCCUGGAUGACAUUUUCAUUGUACAAAAUUGCAAGAGCAUUUGAGUU-UUUGCUUGCCUUGUUGCCUCACAAAAUCCGAGCAUCAAAGGCCAAUGAAAACU -.....((((....))))(((......))).(((((((((.........((((((((......)))-)))))..(((((..(((.((.........)))))...)))))))))))))).. ( -29.10) >DroSec_CAF1 4151 118 - 1 -UUUUUGAGAAUGGUCUUGUCCUGGAUGACAUUUUCAUUGUACAAAAUUGCAAGAGCAUUUGAGUU-UUUGCUUGCCUUGUUGCCUCACAAAACCCGAGCAUCAAAGGCCAAUGAAAACU -.....((((....))))(((......))).(((((((((.........((((((((......)))-)))))..(((((..(((.((.........)))))...)))))))))))))).. ( -29.10) >DroEre_CAF1 4351 119 - 1 -UUUUUGAGAAUGGUCUUGUCCUGGAUGACAUUUUCAUUGUACAAAAUUGCAAGAGCAUAUUAGUUUUUUGCUUGCCUUGUUGCUUCACAAAGUCCGAGCAUCAAAGGCCAAUGAAAACU -.((((((.(((((...((((......))))...))))).).))))).(((....)))....(((((((.....(((((..(((((..........)))))...)))))....))))))) ( -26.90) >DroYak_CAF1 4745 119 - 1 AUUUUUGAGAAUGGUCUUGUCCUGGAUGAGAUUUUCAUUGUACAAAAUUGCAAGAGCAUAUGAGUU-UUUGCUUGCCUUGGUGCUUCACAAAGUCUGAGCACCAAUGGCCAAUGAAAACU .............((((..((...))..))))((((((((.........((((((((......)))-)))))..(((((((((((.((.......)))))))))).)))))))))))... ( -37.90) >consensus _UUUUUGAGAAUGGUCUUGUCCUGGAUGACAUUUUCAUUGUACAAAAUUGCAAGAGCAUAUGAGUU_UUUGCUUGCCUUGUUGCCUCACAAAAUCCGAGCAUCAAAGGCCAAUGAAAACU ...........(.((((......)))).)..(((((((((.........((((((((......))).)))))..((((((.(((.((.........))))).))).)))))))))))).. (-24.02 = -24.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:37 2006