Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,085,395 – 10,085,491 |
Length | 96 |
Max. P | 0.641208 |
Location | 10,085,395 – 10,085,491 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.81 |
Mean single sequence MFE | -30.02 |
Consensus MFE | -21.18 |
Energy contribution | -20.60 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.17 |
Mean z-score | -1.19 |
Structure conservation index | 0.71 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10085395 96 + 27905053 UGGAUACCUUAGCCUCUGGUAGCGACAGUGGGCAUCGGCUAUGACCGCUGAGUACAGGUGUCCAAUGUGAGGAGCUAUUUGUUAAAAAUUAUUUCU (((((((((..(((((((.......))).)))).(((((.......)))))....))))))))).....(((((..((((.....))))..))))) ( -30.30) >DroPse_CAF1 145403 90 + 1 AGGAUACCGAAGCCUCUGAUAUCGACAGUGGGCAUCGGCUAUCACCGCCGAGUACAGGUGGCCAAUGUGUGGGGCUG------AAACAGGGUCCAU .((((.((...(((((((.......))).)))).((((((....(((((.......)))))(((.....))))))))------)....)))))).. ( -32.40) >DroSec_CAF1 144152 96 + 1 UGGAUACCUUAGCCUCUGGUAGCGACAAUGGGCAUCGGCUAUGACCGCUGAGUACAGGUGCCCAAUGUGAGGAGCUAUUCGUUAAAGAGGAUUCCU .(((..((((.....(..(((((.(((.((((((((.(((..........)))...)))))))).))).....)))))..).....))))..))). ( -30.60) >DroEre_CAF1 156420 96 + 1 CGGAUACCUUAGUCUCUGGUAGCGACAGUGGGCAUCGGCUAUGACCGCUGAGUACAGGUGACCAAUAUGAGGAGCUAUCCGAUAAAAGCGAUUCCU ((((((((((((((((((...((..((((((.(((.....))).)))))).)).)))).))).....)))))...))))))............... ( -27.30) >DroAna_CAF1 157975 91 + 1 CGGAUACUUUAGUCUCUGGUACCGGCAGUGGGCAUCGGCAAUCACCGCCGAGUACAAGUGGCCAAUGUGGGGAGCUAAACC-----AAUUAAUUUA .((....(((((.((((.((((((((.(((.((....))...))).)))).))))......((.....)))))))))))))-----.......... ( -27.10) >DroPer_CAF1 146965 90 + 1 AGGAUACCGAAGCCUCUGAUAUCGACAGUGGGCAUCGGCUAUCACCGCCGAGUACAGGUGGCCAAUGUGUGGGGCUG------AAACAGGGUCCAU .((((.((...(((((((.......))).)))).((((((....(((((.......)))))(((.....))))))))------)....)))))).. ( -32.40) >consensus AGGAUACCUUAGCCUCUGGUAGCGACAGUGGGCAUCGGCUAUCACCGCCGAGUACAGGUGGCCAAUGUGAGGAGCUAU_CG__AAAAAGGAUUCCU .((.((((...(((((((.......))).)))).(((((.......))))).....)))).))................................. (-21.18 = -20.60 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:01 2006