| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,059,982 – 10,060,079 |
| Length | 97 |
| Max. P | 0.902924 |
| Location | 10,059,982 – 10,060,079 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.67 |
| Mean single sequence MFE | -33.93 |
| Consensus MFE | -18.19 |
| Energy contribution | -18.86 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10059982 97 + 27905053 AUCAAUAUGGCCCAAGGGCGAGUACGGAACUGUUUGCCAACUGUUUACCCAUUAUUGUUGGCCCAGCGUACUCGCGAAA-UGGCCGAAAGCCAAUUGU .......(((((.....(((((((((...(((...((((((...............)))))).))))))))))))....-.)))))............ ( -33.16) >DroPse_CAF1 132412 94 + 1 AUCAAUAUGGCCG-GGGGCGGCCAUGAAACGG---GCCAACUGUUUGCUUGACAUUGUUUGCGCAUCCUGGUCGCGAAAGUGCCCCGAAGUCAGUUUC .......((((..-((((((((((.((...(.---((.(((((((.....))))..))).)).).)).)))))((....)))))))...))))..... ( -31.30) >DroSim_CAF1 129982 94 + 1 AUCAAUAUGGCCCAAGGGCGAGUACGUAACGG---GCCAACUGUUUGCCCAUGAUUGUUGGCCCGGCGUACUCGCGAAA-UGGCCGAAAGCCAAUUGU .......(((((.....((((((((((..(((---((((((.(((.......))).)))))))))))))))))))....-.)))))............ ( -44.50) >DroEre_CAF1 133292 94 + 1 AUCAAUAUGGCCGAAGGGCGGGUACGAAACAG---GCCAACUGUUUGCCCAUGAUUGUUGGCCCAGCGUACUCGCGAAA-UGGCCCAAAGCCAGUUGG ..((((.(((((....)(((((((((.....(---((((((.(((.......))).)))))))...)))))))))....-.........)))))))). ( -36.60) >DroYak_CAF1 134947 94 + 1 AUCAAUAUGGCCGAAGGGCGGUUAUGGAACAU---GCCAACUGUUUGCCCAUGAUUGUUGGCCCAGCGUACUCGCGAAU-UGGCCCAAAGCCAAUUGU ..((((...(((....)))((((.(((..((.---((((((.(((.......))).))))))...(((....)))....-))..))).)))).)))). ( -31.10) >DroAna_CAF1 145453 94 + 1 AUCAAUAUGGCCGCGGGCCGGAAACUCAACAC---AGCAACUGUUUGCUCGCCAUUAUUGGCACAGGUUGCUCGCAAAA-UGCCCUUAAGCCAAUUUU .......((((...((((.(....).......---((((((((....)..((((....))))...))))))).......-.))))....))))..... ( -26.90) >consensus AUCAAUAUGGCCGAAGGGCGGGUACGAAACAG___GCCAACUGUUUGCCCAUGAUUGUUGGCCCAGCGUACUCGCGAAA_UGGCCCAAAGCCAAUUGU ..((((.((((....(((((((((((.........((((((...............))))))....)))))))))........))....)))))))). (-18.19 = -18.86 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:54 2006