Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,058,099 – 10,058,192 |
Length | 93 |
Max. P | 0.654389 |
Location | 10,058,099 – 10,058,192 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 90.68 |
Mean single sequence MFE | -26.93 |
Consensus MFE | -20.11 |
Energy contribution | -20.05 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.84 |
Structure conservation index | 0.75 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10058099 93 - 27905053 UUCCAGGACCCAUUGAGACCCACUUUCAUCGCACCCCAAGCGUCUUGAGGAUCCUCAAGCCAACUGAUAGCUUUGACUGCACCCAAGGGAAAU ........(((..(((((.....)))))..(((..(.(((((.((((((....)))))))(....)...)))).)..)))......))).... ( -20.60) >DroSec_CAF1 126446 93 - 1 UUUCAGUUCCCAUUGAGACCCAGUUUCAUCGCACCCCAAGCGUCUUGAGGAUCCUCCAGCCAACUGAUAGCUUGGACUGCGCCCAAGGGAAAU ......(((((..((((((...)))))).((((..((((((.....(((....)))(((....)))...))))))..)))).....))))).. ( -30.60) >DroSim_CAF1 127920 93 - 1 UUUCAGUUCUCAUUGAGACCCACUUUCAUCGCACCCCAAGCGUCUUGAGGAUCCUCCAGCCAACUGAUAGCUUGGACUGCGCCCAAGGGAAAU (((((((....)))))))(((........((((..((((((.....(((....)))(((....)))...))))))..)))).....))).... ( -26.02) >DroYak_CAF1 132817 92 - 1 UUU-AGGGCUCAUUAAGACCCACUUUCAUCGCACCCCAAGCGUCUUGGGGAUCCUUCGGUCAUCUGAUAGCUUGGACUGCGCCCGAGGGAAAU ...-.(((.((.....)))))............(((((((...))))))).((((((((.((((..(....)..)).))...))))))))... ( -30.50) >consensus UUUCAGGUCCCAUUGAGACCCACUUUCAUCGCACCCCAAGCGUCUUGAGGAUCCUCCAGCCAACUGAUAGCUUGGACUGCGCCCAAGGGAAAU ........(((..(((((.....)))))..(((..((((((.....(((....)))(((....)))...))))))..)))......))).... (-20.11 = -20.05 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:52 2006