Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,056,654 – 10,056,755 |
Length | 101 |
Max. P | 0.730082 |
Location | 10,056,654 – 10,056,755 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 59.55 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -9.91 |
Energy contribution | -10.24 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.40 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10056654 101 - 27905053 UA-UAGCUAACAACUUGCAUAAAAGAUAUCAACGA-CGAGAACAUUGCACCAGUGUUUU----UCGAUGAUUGAUGGAUGAACAGC-ACUGCAUCAAUCAUAUUUUUU ..-..((.........))..((((((((.......-(((((((((((...))))).)))----))).(((((((((.(((.....)-).).))))))))))))))))) ( -22.20) >DroVir_CAF1 176266 85 - 1 UUUGAUUUAUCAACUCACC-----------------ACAGAGCAUUGCACUUGAGUCCA----UCGAUGAUUGAUGUUCGG-CGACGCGCACAUCAAUCAUCAA-GAC ...((((((.((((((...-----------------...)))..)))....))))))..----..((((((((((((.((.-.....)).))))))))))))..-... ( -23.70) >DroPse_CAF1 128224 101 - 1 UCUGAUUUAUGUACUAGCA-----AAGAGCCGCAUACGAGAACAUUGCACUCGAAUCCCCGAAUCAAUGAUUGAUGGCGGGGCAUUGGGUACAUCAAUCAUGCG--UC ..(((((.(((((((.(((-----(.(..(((....)).)..).))))...(((..(((((.((((.....))))..)))))..)))))))))).)))))....--.. ( -29.50) >DroYak_CAF1 131375 100 - 1 UGGGAAUUAACAACUUGCAUAGGGGAAAUCAGCGA-AGGCAAGAAUGCACCAGUAUUUU----UC-UUGAUUGAUGGCUGAACAGU-AGUACAUCAAUCACUUU-UUU .(((((......((((((((.((.....)).((..-..))....)))))..)))....)----))-))((((((((((((.....)-))).)))))))).....-... ( -21.50) >DroAna_CAF1 141762 102 - 1 CGUGAUUUUUUAAAUUGCAGAAAAAAAAACCCUCU-GCUAAACAUUGCACCAAAAUCCU----UCGAUGAUUGAUGGCGGGGCUGU-GCUACAUCAAUCACGUUCCGU .(..((.(((......(((((...........)))-)).))).))..)...........----.((.(((((((((....(((...-))).)))))))))))...... ( -20.70) >DroPer_CAF1 129740 101 - 1 UCUGAUUUAUGUACUAGCA-----AAGAGCCGCAUACGAGAACAUUGCACUCGAAUCCCCGAAUCAAUGAUUGAUGGCGGGGCAUUGGGUACAUCAAUCAUGCG--UC ..(((((.(((((((.(((-----(.(..(((....)).)..).))))...(((..(((((.((((.....))))..)))))..)))))))))).)))))....--.. ( -29.50) >consensus UCUGAUUUAUCAACUUGCA_____AAAAGCCGCAU_CGAGAACAUUGCACCAGAAUCCU____UCGAUGAUUGAUGGCGGGGCAGU_GGUACAUCAAUCAUGUU__UC ..................................................................((((((((((...............))))))))))....... ( -9.91 = -10.24 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:51 2006