Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,047,278 – 10,047,391 |
Length | 113 |
Max. P | 0.724148 |
Location | 10,047,278 – 10,047,391 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.84 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -12.85 |
Energy contribution | -13.63 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.45 |
Mean z-score | -2.07 |
Structure conservation index | 0.41 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10047278 113 - 27905053 GG-AAGCGUGCUGCA--CAUUUAAGUACCCAAUGUAAUUGGCUAUAAAAGGCCUGCAGUACG----AUAUAUAGACUCUUAGAGGCCUGGUAUAAAGAUGAAGUGCAGCGGCUUUCUAAU ((-((((.(((((((--(.((((.....(((((...))))).((((..((((((..(((.(.----.......)))).....))))))..))))....)))))))))))))))))).... ( -37.00) >DroSec_CAF1 115721 101 - 1 GG-AAGCGUGCUGCA--CAUUUAAGUACCCAAUG-AAUUGGCUAUAAAAGGCC---AGU-----------AAAGAC-CUUAGGGGGCUGGUAAAAAGAUGAAGUGCACCGGCUUUCUAAU ((-((((((((....--(((((...((((.....-.(((((((......))))---)))-----------..((.(-((....)))))))))...)))))....))))..)))))).... ( -30.60) >DroSim_CAF1 117108 108 - 1 GG-AAGCGUGCUGCA--CAUUUAAGUACCCAAUG-AAUUGGCUAUAAAAGGCC---AGUACG----AUAUAAAGAC-CUUAGGGGGCUGGUAAAAAGAUGAAGUGCACUGGCUUUCUAAU ((-((((((((....--(((((...((((...((-.(((((((......))))---))).))----......((.(-((....)))))))))...)))))....))))..)))))).... ( -31.00) >DroEre_CAF1 120672 108 - 1 GC-AAGCGUGCUGCA--CACUUAAGUACAGAAUA-AAUUGGCUAUAAAAGGGC---AGUACG----AUGUAAAGACUCUUAGG-GACUGGUAAAAUGAUGAAGUGCACCGGCUUUCUAAG ((-(..((((((((.--..(((.(((.(((....-..))))))....))).))---))))))----.))).......(((((.-.((((((...((......))..))))).)..))))) ( -26.90) >DroYak_CAF1 121914 113 - 1 GC-AAGCGUGCUGCA--CAUUUAAGUGCCGAAUG-AAUUGGCUAUAAAAGGCC---AGUACGAUCGAUAUAAAGUCUCUUAGGAGGCUGGUAUAAAGAUGAAGUGCACCGGCUUUCUAAU (.-((((((((....--(((((..(((((((.((-.(((((((......))))---))).)).)).......((((((....)))))))))))..)))))....))))..)))).).... ( -35.70) >DroPer_CAF1 118985 105 - 1 AGAAAGAGUGAUGUAUGCCUUGAGGUAAUCGAU--------CUAUAUAAGAAC---UGGGCA----AUACUAAACCUCUGGUCAGACUGUUGGAGCGAUGAAGUGGAGCAGUUCGUUGCU .((.((((....(((((((((((.....))))(--------((.....)))..---..))).----)))).....))))..))..........(((((((((.((...)).))))))))) ( -24.80) >consensus GG_AAGCGUGCUGCA__CAUUUAAGUACCCAAUG_AAUUGGCUAUAAAAGGCC___AGUACG____AUAUAAAGACUCUUAGGGGGCUGGUAAAAAGAUGAAGUGCACCGGCUUUCUAAU .......(((((...........)))))...........((((......)))).........................(((((((((((((...............))))))))))))). (-12.85 = -13.63 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:50 2006