Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,044,385 – 10,044,489 |
Length | 104 |
Max. P | 0.603469 |
Location | 10,044,385 – 10,044,489 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 72.29 |
Mean single sequence MFE | -29.14 |
Consensus MFE | -9.38 |
Energy contribution | -10.72 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.35 |
Mean z-score | -2.05 |
Structure conservation index | 0.32 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10044385 104 - 27905053 A-AAAACUACUGCUUA----------UACUAUAAUAAGGUACACGGACUACAUAGUACCUAUUUGCCUUUGGAGCACCAGCAACCGCAUGGAUUUGCCCCAGGGGCUCAAGAGCU .-.........((((.----------..........((((((............))))))....((((((((.((((((((....)).)))...))).))))))))....)))). ( -31.30) >DroSec_CAF1 112868 99 - 1 C-AAAACUACUGCUUA---------------UGAUAAGGUAUACGGACUACAUAGUACCUAUUUGCCUCUGGAGCGCCAGCAAUCGCAUGGAAUUGGCCCAGGGGCUCAAGAGCU .-.........((((.---------------(((..((((((...(....)...))))))....((((((((.((.(((((....)).))).....))))))))))))).)))). ( -33.10) >DroSim_CAF1 114191 99 - 1 C-AAAACUACUGCUUA---------------UGAUAAGGUAUACGGACUACAUAGUACCUAUUUGCCUCUGGAGCACCAGCAACCGCAUGGAAUUGGCCCAGGGGCUCAAGAGCU .-.........((((.---------------(((..((((((...(....)...))))))....((((((((.((.(((((....)).))).....))))))))))))).)))). ( -33.10) >DroWil_CAF1 121864 100 - 1 A-ACCAUAAGUGUUUA--------------AUAUCUAGAUUCACCAACUACAUAGUUCCAAUUUGCCUGUGGAACACAAAUUAUCGUCUGGAAUUGCCACAGGGACAGAAAUCCU .-.......(((..((--------------((.(((((((..............((((((.........))))))..........))))))))))).))).((((......)))) ( -15.65) >DroYak_CAF1 118874 114 - 1 C-ACAACUACUGCCUAUUUAUACUUAUAUUUUAACAAGGUACACGGACUACAUAGUGCCUAUUUGCCUGUGGAGCACCAGCAACCGCAUGGACUUGCCCCAGGGUCACAAGAGCU .-.........((((.....................((((((............)))))).....((((.((.((((((((....)).)))...)))))))))......)).)). ( -24.60) >DroPer_CAF1 116043 99 - 1 CUAACUCCACUCCUUC---------------UUG-CAGCUUCAGCGACUACAUCGUACCCAUUUGUCUUUGGAGCACGAGCAACCGCAUGGAUCUGCCGGAGGGAGUCAGGUCAU ...(((..((((((((---------------(.(-(((.(((((((......((((.((((........))).).)))).....))).)))).)))).)))))))))..)))... ( -37.10) >consensus C_AAAACUACUGCUUA_______________UAAUAAGGUACACGGACUACAUAGUACCUAUUUGCCUCUGGAGCACCAGCAACCGCAUGGAAUUGCCCCAGGGGCUCAAGAGCU .....................................(((((............))))).....((((((((..(((((((....)).)))...))..))))))))......... ( -9.38 = -10.72 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:48 2006