Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,042,564 – 10,042,662 |
Length | 98 |
Max. P | 0.926605 |
Location | 10,042,564 – 10,042,662 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.95 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -20.62 |
Energy contribution | -20.40 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.28 |
Structure conservation index | 0.95 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10042564 98 - 27905053 GAAAAGUUGCGUGCGAGGCUGUGCCUUGUAAGUAAA-AAGAAAACCAAUUUUAAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA ......(((((((((((((...))))).........-..............................(((((....)))))......)))))))).... ( -20.90) >DroSec_CAF1 111053 98 - 1 GAAAAGUUGCAUGCGAGGCUGCGCCCUGUAAGUAAA-AUGAAAACCAAUUUUAAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA ......((((((((..(((...)))..(((..((((-((........))))))..............(((((....))))).)))..)))))))).... ( -23.10) >DroSim_CAF1 112364 99 - 1 GAAAAGUUGCAUGCGAGGCUGCGCCCUGUAAGUAAAAAAGAAAACCAAUUUUUAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA ......((((((((..(((...)))..........................................(((((....)))))......)))))))).... ( -21.40) >consensus GAAAAGUUGCAUGCGAGGCUGCGCCCUGUAAGUAAA_AAGAAAACCAAUUUUAAAUGAUAUAUCCAAGACUCAAACGAGUCAUACCAGCGUGCAAAAAA ......((((((((..(((...)))..........................................(((((....)))))......)))))))).... (-20.62 = -20.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:47 2006