Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,040,197 – 10,040,293 |
Length | 96 |
Max. P | 0.999547 |
Location | 10,040,197 – 10,040,293 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.73 |
Mean single sequence MFE | -30.64 |
Consensus MFE | -28.50 |
Energy contribution | -28.62 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -2.30 |
Structure conservation index | 0.93 |
SVM decision value | 3.71 |
SVM RNA-class probability | 0.999547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10040197 96 + 27905053 UGAGAAACUCGCUGGGUUUCAGAUUCAGGCAUCGCGGAGAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC .(((...)))((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... ( -31.10) >DroSec_CAF1 108505 96 + 1 UGAGGAACUCGCUGGAUUUCAGAUUCAGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC .(((...)))((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... ( -31.60) >DroSim_CAF1 109944 96 + 1 UGAGGAACUCGCUGGAUUUUAGAUUCAGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC .(((...)))((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... ( -29.00) >DroEre_CAF1 113548 96 + 1 UAAGGAGCUCGCUGGAUUUGGGAUUCAGGCAACGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC ......(((.(((((((....(((((.((...((((.....))))..)).)))))..)))))))......((....))......)))......... ( -27.20) >DroYak_CAF1 114564 96 + 1 UGAGGAGCUCGCUGGAUUUCAGAUUCGGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC .(((...)))((((((((((.((((((((..(((((.....)))))))).))))).......(((........))))))))).))))......... ( -34.30) >consensus UGAGGAACUCGCUGGAUUUCAGAUUCAGGCAUCGCGGAAAACGCGACCCAGAGUCAUGUCCAGCCAUCAAUCAGGCGAAAUUACAGCAUUAAAGUC ..........((((((((((.(((((.((..(((((.....))))).)).))))).......(((........))))))))).))))......... (-28.50 = -28.62 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:44 2006