Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,035,816 – 10,035,912 |
Length | 96 |
Max. P | 0.985825 |
Location | 10,035,816 – 10,035,912 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.13 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -21.29 |
Energy contribution | -21.07 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -4.29 |
Structure conservation index | 0.62 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10035816 96 + 27905053 ----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAAACAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU------- ----......(((.(((....(((((((((((----------((..(.........)..)))))))-)))))).(((.(((((........))))))))))).))).....------- ( -33.70) >DroSec_CAF1 104185 96 + 1 ----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GUACCAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU------- ----......(((.(((....(((((((((((----------(..((.........))..))))))-)))))).(((.(((((........))))))))))).))).....------- ( -33.80) >DroSim_CAF1 104823 96 + 1 ----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAACCAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUACCACACACUUGCACAGUGGUCUCAAU------- ----......(((.(((....(((((((((((----------((.((.........)).)))))))-)))))).(((.(((((........))))))))))).))).....------- ( -36.00) >DroEre_CAF1 109153 96 + 1 ----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAACCAUAUCGCACGGAUUUCUCU-UGGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU------- ----......(((.(((....((((..(((((----------((.((.........)).)))))))-..)))).(((.(((((........))))))))))).))).....------- ( -35.10) >DroYak_CAF1 109312 96 + 1 ----AAAAAUGGCGACUAGAAUGGCUGAGAGA----------GAACCAUAUCUCACGGAUUUCUCU-UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU------- ----......(((.(((....(((((((((((----------((.((.........)).)))))))-)))))).(((.(((((........))))))))))).))).....------- ( -36.00) >DroPer_CAF1 107320 116 + 1 GAGCGAGAAUGGGAAUGCCAAUGGAUAAAAGAAUGAUAGGGGAAACUCUAUCAUAUGGAUUUUUGUCUAGCC--GUGUCAAUAUGCUCAACAAUUGCUCAACCUCCGCAAUCCAUGAA ((((((...((((..((.((.((((((((((.(((((((((....))))))))).....))))))))))...--.)).)).....))))....))))))................... ( -32.30) >consensus ____AAAAAUGGCGACUAGAAUGGCUGAGAGA__________GAACCAUAUCUCACGGAUUUCUCU_UAGCCAAGUGUCAAGUUCCCACACACUUGCACAGUGGUCUCAAU_______ ..........(((.(((....(((((((((((.................(((.....))).))))).)))))).(((.(((((........))))))))))).)))............ (-21.29 = -21.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:43 2006