Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,032,710 – 10,032,820 |
Length | 110 |
Max. P | 0.701408 |
Location | 10,032,710 – 10,032,820 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -15.93 |
Energy contribution | -16.93 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.18 |
Mean z-score | -2.42 |
Structure conservation index | 0.64 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10032710 110 - 27905053 U-UCCCCAACUGUUUAAAUU-UCUUUUAGCCCACACUUGGCAGAUGCUGUGUUUAUGCUUUCACUUUGCCCGAUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUUAU .-...((((.((((((((..-...)))))...))).)))).....(((..(((((((((((((((..((.....))..))))))))))..)))))...)))........... ( -25.70) >DroSec_CAF1 101231 110 - 1 U-UCCCCAACUGUUUAAAUU-UCUUUUUGCCCACACUUGGCAGAUGCUGUGUUUAUGCUUUCACUUUGCCCGCUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUCUU .-.......((((.......-....((((((.......)))))).(((..(((((((((((((((..((.....))..))))))))))..)))))...)))..))))..... ( -27.60) >DroSim_CAF1 101423 111 - 1 U-UCCCCAACUGUUUAAAUUUUCUUUUAGCCCACACUUGGCAAGUGCUGUGUUUAUGCUUUCACUUUGCCCGCUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUCUU .-...((((.((((((((......)))))...))).)))).(((.((((((((((((((((((((..((.....))..)))))))))))........))))..))))).))) ( -27.50) >DroEre_CAF1 106042 105 - 1 CGCCCCCAACUGUUAAAAUA-UGUUUUAGCCCACACUUGGCAGAUGCUUUGUUUA-GCUUUCAUCCUGCCCACU-----GUGGAAGCUUCUAAAUUUAAGCAUAUAGCUCUU .((........(((((((..-..)))))))(((((...(((((..(((......)-)).......)))))...)-----))))..((((........)))).....)).... ( -22.50) >DroYak_CAF1 106052 100 - 1 C-UCCCCAGCUGUUAAAAUA-UCUUUUAGCCAACAGUUGGCAGAUGCUUUGUUUA-GCUUUUACUUUGCCCG-------GUGAAAGCAUCUAAAUUUAAGCAUAUA--UCUU .-...(((((((((....((-.....))...)))))))))...((((((.(((((-(((((((((......)-------))))))))...)))))..))))))...--.... ( -27.20) >DroAna_CAF1 114584 110 - 1 U-UCUCCGCCAGUUUAAAUA-UCUUUUAGCACACACUUGGCAGAUGCUUUGUUUAUGCUUUCUCUUUGCGCGCUGUUCCGUGAAAGCAUCUAAAUUCCCGCUUACAGUUCUC .-.....(((((((((((..-...))))).....)).))))(((((((((......((.........)).(((......))))))))))))..................... ( -18.90) >consensus U_UCCCCAACUGUUUAAAUA_UCUUUUAGCCCACACUUGGCAGAUGCUGUGUUUAUGCUUUCACUUUGCCCGCUGCUCGGUGAAAGCAUCUAAAUUAAAGCUUAUAGCUCUU ............................(((.......)))....(((..((((((((((((((...((.....))...)))))))))..)))))...)))........... (-15.93 = -16.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:42 2006